miRNA display CGI


Results 1 - 20 of 373 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29426 5' -68.5 NC_006151.1 + 714 0.69 0.230432
Target:  5'- cGUCGCaccggggguccgcggGCgGGGGCUuccgcuccgcgGCGCCCGCCCc -3'
miRNA:   3'- -CAGCGg--------------CGgCUCCGG-----------CGCGGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 1679 0.77 0.064411
Target:  5'- -cCGCCGCCGAGcccuccGCCGCGgCCGCCg- -3'
miRNA:   3'- caGCGGCGGCUC------CGGCGCgGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 1834 0.67 0.286896
Target:  5'- -gCGCCGCCG-GGCCGaggggaccgaGgCCGCCg- -3'
miRNA:   3'- caGCGGCGGCuCCGGCg---------CgGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 2000 0.66 0.369218
Target:  5'- aGUCcgGCCggGCCGAGGggGCGcCCCGCUCa -3'
miRNA:   3'- -CAG--CGG--CGGCUCCggCGC-GGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 2166 0.73 0.110799
Target:  5'- cGUCcUCGCCGGGGCCG-GCCCcggcGCCCg -3'
miRNA:   3'- -CAGcGGCGGCUCCGGCgCGGG----CGGGa -5'
29426 5' -68.5 NC_006151.1 + 3110 0.66 0.346481
Target:  5'- --gGCCGCCGcggcgcgggucccAGGCCGgGCgcggggCGCCCUc -3'
miRNA:   3'- cagCGGCGGC-------------UCCGGCgCGg-----GCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 3608 0.75 0.088901
Target:  5'- cGUCGUCGCgGuGGCCGUGgCCGUCCc -3'
miRNA:   3'- -CAGCGGCGgCuCCGGCGCgGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 3633 0.67 0.319327
Target:  5'- ---cCCGCgGAgGGCCGCGCCggagaGCCCc -3'
miRNA:   3'- cagcGGCGgCU-CCGGCGCGGg----CGGGa -5'
29426 5' -68.5 NC_006151.1 + 3854 0.68 0.274068
Target:  5'- --aGCCGggGAGGCCggaggggGCGCCCGCCg- -3'
miRNA:   3'- cagCGGCggCUCCGG-------CGCGGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 4127 0.76 0.076656
Target:  5'- -cUGCCGCCGcucGGCCGgGCCgGCCCc -3'
miRNA:   3'- caGCGGCGGCu--CCGGCgCGGgCGGGa -5'
29426 5' -68.5 NC_006151.1 + 4278 0.7 0.20518
Target:  5'- -aCGCCGCgGcAGGCCaggacgcagGCGUCCGCCa- -3'
miRNA:   3'- caGCGGCGgC-UCCGG---------CGCGGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 5403 0.72 0.128107
Target:  5'- cGUCcCCGgCGAGGCCGaGUCCGUCCUc -3'
miRNA:   3'- -CAGcGGCgGCUCCGGCgCGGGCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 5633 0.73 0.119161
Target:  5'- -cCGCCGCCGGGcGCCGaGaCCgGCCCg -3'
miRNA:   3'- caGCGGCGGCUC-CGGCgC-GGgCGGGa -5'
29426 5' -68.5 NC_006151.1 + 5733 0.78 0.054064
Target:  5'- -gCGCCGggguCCGAGGCCGCGCCgccgGCCCg -3'
miRNA:   3'- caGCGGC----GGCUCCGGCGCGGg---CGGGa -5'
29426 5' -68.5 NC_006151.1 + 5920 0.72 0.134412
Target:  5'- gGUCgGCgGCCGGGGCCcggaGCCgGCCCg -3'
miRNA:   3'- -CAG-CGgCGGCUCCGGcg--CGGgCGGGa -5'
29426 5' -68.5 NC_006151.1 + 6015 0.68 0.274669
Target:  5'- --gGCgGCCGGGGacCCGgGCUCGUCCUc -3'
miRNA:   3'- cagCGgCGGCUCC--GGCgCGGGCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 6256 0.73 0.119161
Target:  5'- -cCGCCGUCGGGGCCGgaCGCgaUGCCCUc -3'
miRNA:   3'- caGCGGCGGCUCCGGC--GCGg-GCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 6658 0.67 0.286896
Target:  5'- -gCGCC-CCGAGGaga-GCCCGCCCc -3'
miRNA:   3'- caGCGGcGGCUCCggcgCGGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 8290 0.77 0.064411
Target:  5'- uGUCcCCGCgCGGGcGCCGCGuCCCGCCCc -3'
miRNA:   3'- -CAGcGGCG-GCUC-CGGCGC-GGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 8321 0.69 0.208498
Target:  5'- --aGCCcCCGGGGCgcgcgggccucgauCGCGCCCGCCg- -3'
miRNA:   3'- cagCGGcGGCUCCG--------------GCGCGGGCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.