miRNA display CGI


Results 1 - 20 of 373 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29426 5' -68.5 NC_006151.1 + 142314 0.69 0.235151
Target:  5'- -gCGCCGUaugGGGGCCcgcgcgcucgcgGCGCCCGCUUUg -3'
miRNA:   3'- caGCGGCGg--CUCCGG------------CGCGGGCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 141846 0.71 0.151442
Target:  5'- cUCGaCGCgaGGGGCuCGCGCCgCGCCCUc -3'
miRNA:   3'- cAGCgGCGg-CUCCG-GCGCGG-GCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 141774 0.7 0.20471
Target:  5'- cGUCGCCGguucugucCCGGGGaCGCGggucgguCCCGCCCc -3'
miRNA:   3'- -CAGCGGC--------GGCUCCgGCGC-------GGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 141634 0.69 0.21973
Target:  5'- gGUCGCUGCCGcGGCgGCGCggcgggGCCCc -3'
miRNA:   3'- -CAGCGGCGGCuCCGgCGCGgg----CGGGa -5'
29426 5' -68.5 NC_006151.1 + 140057 0.69 0.224772
Target:  5'- -aCGCCaCCGAGGCgGCGCgCGUgCUc -3'
miRNA:   3'- caGCGGcGGCUCCGgCGCGgGCGgGA- -5'
29426 5' -68.5 NC_006151.1 + 139929 0.66 0.333049
Target:  5'- cUCGUCGCCGuGGGCCGCcGUCCucgaguucggcGCCg- -3'
miRNA:   3'- cAGCGGCGGC-UCCGGCG-CGGG-----------CGGga -5'
29426 5' -68.5 NC_006151.1 + 139645 0.66 0.346481
Target:  5'- -cCGgCGCgGGGGUCgcggcggGCGCgCCGCCCg -3'
miRNA:   3'- caGCgGCGgCUCCGG-------CGCG-GGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 139576 0.68 0.280729
Target:  5'- -cCGCgagCGCCuGGGCuCGCGCCCcCCCg -3'
miRNA:   3'- caGCG---GCGGcUCCG-GCGCGGGcGGGa -5'
29426 5' -68.5 NC_006151.1 + 138958 0.7 0.182785
Target:  5'- uUCGCCugguacaugGCCGAGcucgcgacgcGCCGCGCCgCGCUCa -3'
miRNA:   3'- cAGCGG---------CGGCUC----------CGGCGCGG-GCGGGa -5'
29426 5' -68.5 NC_006151.1 + 138627 0.73 0.110799
Target:  5'- -aCGCCGCCGGGGgCGCGCCgGaCUg -3'
miRNA:   3'- caGCGGCGGCUCCgGCGCGGgCgGGa -5'
29426 5' -68.5 NC_006151.1 + 137422 0.72 0.13767
Target:  5'- cUCGCCGCCGccGCgGgGUCCGCCUc -3'
miRNA:   3'- cAGCGGCGGCucCGgCgCGGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 136874 0.72 0.147886
Target:  5'- -cCGCCGUCGAGGa-GCGCCucgCGCCCc -3'
miRNA:   3'- caGCGGCGGCUCCggCGCGG---GCGGGa -5'
29426 5' -68.5 NC_006151.1 + 136813 0.68 0.251471
Target:  5'- cUCGCgGCCGAcGcGCCGCGCggGCUCUg -3'
miRNA:   3'- cAGCGgCGGCU-C-CGGCGCGggCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 136728 0.72 0.141001
Target:  5'- cGUCGCCcagaacgugacGCCGAGcGUcgCGCGCCuCGCCCc -3'
miRNA:   3'- -CAGCGG-----------CGGCUC-CG--GCGCGG-GCGGGa -5'
29426 5' -68.5 NC_006151.1 + 136103 0.66 0.339364
Target:  5'- aUCGCgGUCGGGcGCCGCGggcugacCUCGCUCUu -3'
miRNA:   3'- cAGCGgCGGCUC-CGGCGC-------GGGCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 136051 0.67 0.304077
Target:  5'- -gCGCCcgcgcaccggcaacGCCGAGuaCGCGCCggagCGCCCg -3'
miRNA:   3'- caGCGG--------------CGGCUCcgGCGCGG----GCGGGa -5'
29426 5' -68.5 NC_006151.1 + 135901 0.7 0.187084
Target:  5'- cGUCGCCGCCGcgaccccggcGGUCGUGCgCgCGCUCUg -3'
miRNA:   3'- -CAGCGGCGGCu---------CCGGCGCG-G-GCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 135810 0.75 0.091115
Target:  5'- --aGCgCGCCGAGGCCgagcuuuuaGCGCgCCGCCCc -3'
miRNA:   3'- cagCG-GCGGCUCCGG---------CGCG-GGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 135406 0.68 0.280729
Target:  5'- cGUCGUCGCCgGAGGCCucGUGgCgCGCCa- -3'
miRNA:   3'- -CAGCGGCGG-CUCCGG--CGCgG-GCGGga -5'
29426 5' -68.5 NC_006151.1 + 135360 0.72 0.141001
Target:  5'- --aGCCGCCGcgcguuGGCCGCGUgCGCCg- -3'
miRNA:   3'- cagCGGCGGCu-----CCGGCGCGgGCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.