miRNA display CGI


Results 21 - 40 of 373 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29426 5' -68.5 NC_006151.1 + 10490 0.74 0.108136
Target:  5'- --aGCCGCCc-GGCgCGCGCCCGCCg- -3'
miRNA:   3'- cagCGGCGGcuCCG-GCGCGGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 11026 0.7 0.20518
Target:  5'- cUCGCuCGCCG-GGCCG-GCCgGCCg- -3'
miRNA:   3'- cAGCG-GCGGCuCCGGCgCGGgCGGga -5'
29426 5' -68.5 NC_006151.1 + 11316 0.66 0.340071
Target:  5'- --gGCCGCCGcgauaccgcgcGGGCgauacCGCGCgggCCGCCCg -3'
miRNA:   3'- cagCGGCGGC-----------UCCG-----GCGCG---GGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 11493 0.67 0.306034
Target:  5'- --aGCCuucGCUGAGuGCUGCcCCCGCCCc -3'
miRNA:   3'- cagCGG---CGGCUC-CGGCGcGGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 11994 0.66 0.340071
Target:  5'- -gCGCCGCUGucuGUgGCGCCCGUCg- -3'
miRNA:   3'- caGCGGCGGCuc-CGgCGCGGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 12666 0.72 0.134412
Target:  5'- -cCGCCGCCGcGGCCGCaGCCgccgcgaucCGUCCUc -3'
miRNA:   3'- caGCGGCGGCuCCGGCG-CGG---------GCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 12753 0.69 0.21973
Target:  5'- aUCGCCGCggagggcuggcuCGAGGCCa-GCgCGCCCUu -3'
miRNA:   3'- cAGCGGCG------------GCUCCGGcgCGgGCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 13178 0.7 0.187084
Target:  5'- gGUCGCCGCggccgucuCGGGGcCCGCGgCgCCGCCa- -3'
miRNA:   3'- -CAGCGGCG--------GCUCC-GGCGC-G-GGCGGga -5'
29426 5' -68.5 NC_006151.1 + 13390 0.69 0.214784
Target:  5'- -cCGCCuCCGGGGaCGCGCCgGCCa- -3'
miRNA:   3'- caGCGGcGGCUCCgGCGCGGgCGGga -5'
29426 5' -68.5 NC_006151.1 + 13671 0.69 0.214784
Target:  5'- -cCGCCuCCGGGGaCGCGCCgGCCa- -3'
miRNA:   3'- caGCGGcGGCUCCgGCGCGGgCGGga -5'
29426 5' -68.5 NC_006151.1 + 13951 0.69 0.224772
Target:  5'- -gCGCC-CCGGGGaCGCGCCgGCCa- -3'
miRNA:   3'- caGCGGcGGCUCCgGCGCGGgCGGga -5'
29426 5' -68.5 NC_006151.1 + 14149 0.69 0.224772
Target:  5'- --aGCCGaCGAGgaGCCGCGcCCCGCUCg -3'
miRNA:   3'- cagCGGCgGCUC--CGGCGC-GGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 15151 0.68 0.244834
Target:  5'- --gGCCGCCGAcgugacgGGCgacacgcgcgcccUGCGCCgCGCCCUc -3'
miRNA:   3'- cagCGGCGGCU-------CCG-------------GCGCGG-GCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 15885 0.69 0.209455
Target:  5'- -cCGcCCGCCGGGGgacgCGCGCCCcgacgcgGCCCg -3'
miRNA:   3'- caGC-GGCGGCUCCg---GCGCGGG-------CGGGa -5'
29426 5' -68.5 NC_006151.1 + 15921 0.7 0.20518
Target:  5'- -cCGCCGCCccguGAGGCgG-GCCuCGCCCc -3'
miRNA:   3'- caGCGGCGG----CUCCGgCgCGG-GCGGGa -5'
29426 5' -68.5 NC_006151.1 + 16892 0.75 0.084626
Target:  5'- cUCG-CGuCCGuuGCCGCGCCCGCCCc -3'
miRNA:   3'- cAGCgGC-GGCucCGGCGCGGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 17080 0.77 0.061274
Target:  5'- -cCGCCGCCGggucAGGCgCGCGCCCGUCg- -3'
miRNA:   3'- caGCGGCGGC----UCCG-GCGCGGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 17193 0.66 0.354433
Target:  5'- --gGUgGaUCGGGGCCGUGCCCcggGCCCc -3'
miRNA:   3'- cagCGgC-GGCUCCGGCGCGGG---CGGGa -5'
29426 5' -68.5 NC_006151.1 + 17315 0.66 0.347199
Target:  5'- -cCGuCCGCCGGGgggcGCCGCGUCaGCUCg -3'
miRNA:   3'- caGC-GGCGGCUC----CGGCGCGGgCGGGa -5'
29426 5' -68.5 NC_006151.1 + 18432 0.74 0.108136
Target:  5'- --gGCCGCCGGcGGgCGuCGCCCGCCUc -3'
miRNA:   3'- cagCGGCGGCU-CCgGC-GCGGGCGGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.