Results 21 - 40 of 373 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29426 | 5' | -68.5 | NC_006151.1 | + | 96835 | 0.66 | 0.354433 |
Target: 5'- -cCGCCaaugggggaaagGgCGGGGaaaCCGCGCCCGCCg- -3' miRNA: 3'- caGCGG------------CgGCUCC---GGCGCGGGCGGga -5' |
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29426 | 5' | -68.5 | NC_006151.1 | + | 108052 | 0.66 | 0.354433 |
Target: 5'- --aGCCGCCGAcccgGGCCcagaCGCagaCCGCCCc -3' miRNA: 3'- cagCGGCGGCU----CCGGc---GCG---GGCGGGa -5' |
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29426 | 5' | -68.5 | NC_006151.1 | + | 20884 | 0.66 | 0.369218 |
Target: 5'- -gCGCUugggGUCGAGGCgcagcagcuccaCGCGCCCGCUg- -3' miRNA: 3'- caGCGG----CGGCUCCG------------GCGCGGGCGGga -5' |
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29426 | 5' | -68.5 | NC_006151.1 | + | 41604 | 0.66 | 0.369218 |
Target: 5'- --aGcCCGCCccGGCCGCGCCCcggaaGCCg- -3' miRNA: 3'- cagC-GGCGGcuCCGGCGCGGG-----CGGga -5' |
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29426 | 5' | -68.5 | NC_006151.1 | + | 62018 | 0.66 | 0.369218 |
Target: 5'- -gCGCCGCCcuGGCgGCcaGCCC-CCCg -3' miRNA: 3'- caGCGGCGGcuCCGgCG--CGGGcGGGa -5' |
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29426 | 5' | -68.5 | NC_006151.1 | + | 69423 | 0.66 | 0.369218 |
Target: 5'- cGUCG-CGCC-AGGCgGCGCcgCCGCCg- -3' miRNA: 3'- -CAGCgGCGGcUCCGgCGCG--GGCGGga -5' |
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29426 | 5' | -68.5 | NC_006151.1 | + | 99722 | 0.66 | 0.369218 |
Target: 5'- -gCGCCGaCGAGcGCgGCGCUCGUCg- -3' miRNA: 3'- caGCGGCgGCUC-CGgCGCGGGCGGga -5' |
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29426 | 5' | -68.5 | NC_006151.1 | + | 109414 | 0.66 | 0.369218 |
Target: 5'- uUCGCgGCC--GGCCGCaccaccGCCgGCCCc -3' miRNA: 3'- cAGCGgCGGcuCCGGCG------CGGgCGGGa -5' |
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29426 | 5' | -68.5 | NC_006151.1 | + | 24970 | 0.66 | 0.369218 |
Target: 5'- -gCGCCGCgGccuGCCGCGUCaGCCCc -3' miRNA: 3'- caGCGGCGgCuc-CGGCGCGGgCGGGa -5' |
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29426 | 5' | -68.5 | NC_006151.1 | + | 72885 | 0.66 | 0.369218 |
Target: 5'- -gUGUCGgCGAuGaGCCGCGCCaGCCCc -3' miRNA: 3'- caGCGGCgGCU-C-CGGCGCGGgCGGGa -5' |
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29426 | 5' | -68.5 | NC_006151.1 | + | 2000 | 0.66 | 0.369218 |
Target: 5'- aGUCcgGCCggGCCGAGGggGCGcCCCGCUCa -3' miRNA: 3'- -CAG--CGG--CGGCUCCggCGC-GGGCGGGa -5' |
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29426 | 5' | -68.5 | NC_006151.1 | + | 30703 | 0.66 | 0.369218 |
Target: 5'- --gGgUGUCGGGGCCGgGUUCGCUCUg -3' miRNA: 3'- cagCgGCGGCUCCGGCgCGGGCGGGA- -5' |
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29426 | 5' | -68.5 | NC_006151.1 | + | 35414 | 0.66 | 0.361035 |
Target: 5'- -cCGCCGCgGGGGCCGgGCaugcaaaUgGUCCUc -3' miRNA: 3'- caGCGGCGgCUCCGGCgCG-------GgCGGGA- -5' |
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29426 | 5' | -68.5 | NC_006151.1 | + | 57227 | 0.66 | 0.361773 |
Target: 5'- --gGCCGUCGcAGGCgGCGCgCGCggCCUc -3' miRNA: 3'- cagCGGCGGC-UCCGgCGCGgGCG--GGA- -5' |
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29426 | 5' | -68.5 | NC_006151.1 | + | 58807 | 0.66 | 0.361773 |
Target: 5'- --aGCgCGCCGcGuaCGCGCCgGCCCc -3' miRNA: 3'- cagCG-GCGGCuCcgGCGCGGgCGGGa -5' |
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29426 | 5' | -68.5 | NC_006151.1 | + | 108010 | 0.66 | 0.361773 |
Target: 5'- -cCGCCGCCGccaccaCCGCGCCCaagGCCa- -3' miRNA: 3'- caGCGGCGGCucc---GGCGCGGG---CGGga -5' |
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29426 | 5' | -68.5 | NC_006151.1 | + | 20288 | 0.66 | 0.361773 |
Target: 5'- aUCuUC-CCGGGGCCccggGCGCCCGCCg- -3' miRNA: 3'- cAGcGGcGGCUCCGG----CGCGGGCGGga -5' |
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29426 | 5' | -68.5 | NC_006151.1 | + | 95197 | 0.66 | 0.361773 |
Target: 5'- -cUGCagGCCGAugcccagcgagcGGCUGCGCCgcaCGCCCUc -3' miRNA: 3'- caGCGg-CGGCU------------CCGGCGCGG---GCGGGA- -5' |
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29426 | 5' | -68.5 | NC_006151.1 | + | 84482 | 0.66 | 0.366974 |
Target: 5'- uUCGCCuUCGAGGCCGCugcgaucccgggcaGCgCGCgCCa -3' miRNA: 3'- cAGCGGcGGCUCCGGCG--------------CGgGCG-GGa -5' |
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29426 | 5' | -68.5 | NC_006151.1 | + | 69711 | 0.66 | 0.366974 |
Target: 5'- -cCGCCGCCGGGGgCaGCagcgcgucgaugugGCCC-CCCg -3' miRNA: 3'- caGCGGCGGCUCCgG-CG--------------CGGGcGGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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