Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29427 | 3' | -59.3 | NC_006151.1 | + | 99555 | 0.66 | 0.717869 |
Target: 5'- -aCGUGG-GCGCGGCGCG--CGCGGc -3' miRNA: 3'- uaGUACCgCGCGUCGUGCcaGCGCUu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 101539 | 0.67 | 0.640717 |
Target: 5'- uUCGUGGCGCGCcuGCgcccgGCGGacguguacgcgcacgUCGCGGg -3' miRNA: 3'- uAGUACCGCGCGu-CG-----UGCC---------------AGCGCUu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 102266 | 0.66 | 0.727789 |
Target: 5'- cAUCcugGGCGCGCuGC-CGGagCGCGGc -3' miRNA: 3'- -UAGua-CCGCGCGuCGuGCCa-GCGCUu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 102401 | 0.75 | 0.24464 |
Target: 5'- gGUCGcGGCGCGCGucGCGCGGccCGCGAAc -3' miRNA: 3'- -UAGUaCCGCGCGU--CGUGCCa-GCGCUU- -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 102498 | 0.68 | 0.55506 |
Target: 5'- uUCAUGGaCGcCGCGGCGCGGgaccccgGCGGc -3' miRNA: 3'- uAGUACC-GC-GCGUCGUGCCag-----CGCUu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 102545 | 0.69 | 0.525173 |
Target: 5'- gGUgGUGGCGCGC-GCGCGGgcccuguuugCGCGc- -3' miRNA: 3'- -UAgUACCGCGCGuCGUGCCa---------GCGCuu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 102694 | 0.67 | 0.626352 |
Target: 5'- ----gGGCGCcCGGCGCGGgcggCGCGGc -3' miRNA: 3'- uaguaCCGCGcGUCGUGCCa---GCGCUu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 103636 | 0.66 | 0.727789 |
Target: 5'- --gGUGGCG-GCGGCgcugGCGGaCGCGGAc -3' miRNA: 3'- uagUACCGCgCGUCG----UGCCaGCGCUU- -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 103960 | 0.68 | 0.595624 |
Target: 5'- cUCGcGGCGCGcCAGCGC-GUCgGCGAGc -3' miRNA: 3'- uAGUaCCGCGC-GUCGUGcCAG-CGCUU- -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 105285 | 0.68 | 0.575261 |
Target: 5'- ----gGGCGCGC-GCGCGGcCGCGc- -3' miRNA: 3'- uaguaCCGCGCGuCGUGCCaGCGCuu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 105782 | 0.67 | 0.616094 |
Target: 5'- cGUCAUcgcacGGUGCGCgaGGCGCGGagcgaCGCGGAc -3' miRNA: 3'- -UAGUA-----CCGCGCG--UCGUGCCa----GCGCUU- -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 105873 | 0.66 | 0.697816 |
Target: 5'- ----aGGUGUGCuaccGCGCGGUCgGCGAc -3' miRNA: 3'- uaguaCCGCGCGu---CGUGCCAG-CGCUu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 111543 | 0.75 | 0.238788 |
Target: 5'- cAUCAUGGCGCGCAGC--GGcCGCGu- -3' miRNA: 3'- -UAGUACCGCGCGUCGugCCaGCGCuu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 115574 | 0.67 | 0.636613 |
Target: 5'- ----gGGCGCGCgGGCA-GGUCGCGc- -3' miRNA: 3'- uaguaCCGCGCG-UCGUgCCAGCGCuu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 115948 | 0.73 | 0.33182 |
Target: 5'- -gCcgGGCGCGCgAGCGCGagcGUCGUGAAg -3' miRNA: 3'- uaGuaCCGCGCG-UCGUGC---CAGCGCUU- -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 117064 | 0.68 | 0.55506 |
Target: 5'- gGUCGUGGuCGaGCAGCAggcgcgUGGUCGCGu- -3' miRNA: 3'- -UAGUACC-GCgCGUCGU------GCCAGCGCuu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 118128 | 0.78 | 0.166038 |
Target: 5'- cUCGUGGCGCGCAGCgccgacgacgccgcgGCGGUgGCGc- -3' miRNA: 3'- uAGUACCGCGCGUCG---------------UGCCAgCGCuu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 118789 | 0.78 | 0.144593 |
Target: 5'- --gGUGGCGCGCGGCGCGG-CGCa-- -3' miRNA: 3'- uagUACCGCGCGUCGUGCCaGCGcuu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 118933 | 0.69 | 0.515344 |
Target: 5'- cGUCAUGaGCGCcgacGCGGCGCuGUCGCuGGAg -3' miRNA: 3'- -UAGUAC-CGCG----CGUCGUGcCAGCG-CUU- -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 120186 | 0.66 | 0.701847 |
Target: 5'- cAUCGUGGCcccggaccccaccaaGgGCAGCGCGGagcccccggcgCGCGAc -3' miRNA: 3'- -UAGUACCG---------------CgCGUCGUGCCa----------GCGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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