miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29427 3' -59.3 NC_006151.1 + 69639 0.67 0.657118
Target:  5'- cGUCccGcGCGUGCGGCGCcgccgGGUCGuCGAAg -3'
miRNA:   3'- -UAGuaC-CGCGCGUCGUG-----CCAGC-GCUU- -5'
29427 3' -59.3 NC_006151.1 + 73379 0.78 0.148363
Target:  5'- cGUCAcgggGGCGCGCAGCGCGGcCGCc-- -3'
miRNA:   3'- -UAGUa---CCGCGCGUCGUGCCaGCGcuu -5'
29427 3' -59.3 NC_006151.1 + 75451 0.76 0.21654
Target:  5'- -gCGUGGCGCGCGuaGCGGUCgGCGGc -3'
miRNA:   3'- uaGUACCGCGCGUcgUGCCAG-CGCUu -5'
29427 3' -59.3 NC_006151.1 + 76190 0.7 0.476826
Target:  5'- --gAUGGCGCGCAgccGCAUGGcCGaCGAGa -3'
miRNA:   3'- uagUACCGCGCGU---CGUGCCaGC-GCUU- -5'
29427 3' -59.3 NC_006151.1 + 76664 0.7 0.448897
Target:  5'- ----gGGCGCGUGuGCGCGGUCGCu-- -3'
miRNA:   3'- uaguaCCGCGCGU-CGUGCCAGCGcuu -5'
29427 3' -59.3 NC_006151.1 + 78231 0.66 0.677542
Target:  5'- cUCAcgGGCGCGCAGC--GGuUCGCGc- -3'
miRNA:   3'- uAGUa-CCGCGCGUCGugCC-AGCGCuu -5'
29427 3' -59.3 NC_006151.1 + 81568 0.68 0.595624
Target:  5'- -cCGUGGUGCGgAGCAgGGucUCGCGc- -3'
miRNA:   3'- uaGUACCGCGCgUCGUgCC--AGCGCuu -5'
29427 3' -59.3 NC_006151.1 + 83360 0.67 0.626352
Target:  5'- ----cGGCGCGC-GCGCGGgCGCGc- -3'
miRNA:   3'- uaguaCCGCGCGuCGUGCCaGCGCuu -5'
29427 3' -59.3 NC_006151.1 + 83602 0.66 0.677542
Target:  5'- ----aGGCGCGUgugcagcagcaGGUACGGcgUCGCGAAg -3'
miRNA:   3'- uaguaCCGCGCG-----------UCGUGCC--AGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 86554 0.67 0.615069
Target:  5'- -cCGUGGCGCcguuccgGCAGCucuCGG-CGCGGg -3'
miRNA:   3'- uaGUACCGCG-------CGUCGu--GCCaGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 89851 0.68 0.565137
Target:  5'- -gCGUgGGUGUGCGGgACGGUCGCc-- -3'
miRNA:   3'- uaGUA-CCGCGCGUCgUGCCAGCGcuu -5'
29427 3' -59.3 NC_006151.1 + 90752 0.67 0.626352
Target:  5'- cUCGggGGCG-GCgGGCACGGUgGCGGGg -3'
miRNA:   3'- uAGUa-CCGCgCG-UCGUGCCAgCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 90998 0.7 0.486327
Target:  5'- ---cUGGCGCGCuccAGCACGGcggucccgUCGCGGu -3'
miRNA:   3'- uaguACCGCGCG---UCGUGCC--------AGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 94738 0.66 0.687702
Target:  5'- cGUCccGGCGCGC-GCACucgCGCGGAa -3'
miRNA:   3'- -UAGuaCCGCGCGuCGUGccaGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 95163 0.69 0.545036
Target:  5'- -cCAUGuccaGCGC-CAGCACGGUCGUGu- -3'
miRNA:   3'- uaGUAC----CGCGcGUCGUGCCAGCGCuu -5'
29427 3' -59.3 NC_006151.1 + 95781 0.66 0.677542
Target:  5'- -gCAUGcCGCGCauguucAGCACGG-CGCGAc -3'
miRNA:   3'- uaGUACcGCGCG------UCGUGCCaGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 97488 0.7 0.448897
Target:  5'- -aCGUGGaCGCGCAGCGCc-UCGCGGc -3'
miRNA:   3'- uaGUACC-GCGCGUCGUGccAGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 97772 1.04 0.002247
Target:  5'- gAUCAUGGCGCGCAGCACGGUCGCGAAg -3'
miRNA:   3'- -UAGUACCGCGCGUCGUGCCAGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 97802 0.76 0.206097
Target:  5'- cUCA-GGCGCGCGGCcgugcgcCGGUCGCGGu -3'
miRNA:   3'- uAGUaCCGCGCGUCGu------GCCAGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 97844 0.7 0.467418
Target:  5'- -aCGUGcGCGCGCAGCGCGucGUcCGCGu- -3'
miRNA:   3'- uaGUAC-CGCGCGUCGUGC--CA-GCGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.