miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29427 3' -59.3 NC_006151.1 + 4342 0.67 0.636613
Target:  5'- ----cGGCGaagGCGGCGCGGaCGCGGg -3'
miRNA:   3'- uaguaCCGCg--CGUCGUGCCaGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 4792 0.67 0.657118
Target:  5'- ----cGGC-CGCGGCGCGGUaGCGGg -3'
miRNA:   3'- uaguaCCGcGCGUCGUGCCAgCGCUu -5'
29427 3' -59.3 NC_006151.1 + 16979 0.69 0.535072
Target:  5'- -gCGUGGCGC-CAGgaGCGGUUGUGGAc -3'
miRNA:   3'- uaGUACCGCGcGUCg-UGCCAGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 17406 0.73 0.302762
Target:  5'- -gCGUGGCGCGCGGCAgcaGGgccaGCGAGc -3'
miRNA:   3'- uaGUACCGCGCGUCGUg--CCag--CGCUU- -5'
29427 3' -59.3 NC_006151.1 + 17631 0.75 0.250611
Target:  5'- -cCAUGGCGCG-AGCGCGuUCGCGAc -3'
miRNA:   3'- uaGUACCGCGCgUCGUGCcAGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 19273 0.72 0.388299
Target:  5'- cUCGUGGCGCGCGGggcccaccggggccaGCGG-CGCGGg -3'
miRNA:   3'- uAGUACCGCGCGUCg--------------UGCCaGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 38275 0.66 0.677542
Target:  5'- -aCGUGGC-CGCGGCcCGGcUCGcCGAGg -3'
miRNA:   3'- uaGUACCGcGCGUCGuGCC-AGC-GCUU- -5'
29427 3' -59.3 NC_006151.1 + 52603 0.7 0.475881
Target:  5'- -gCGUGGacgaaggcgucguCGCGCAGgACGGcCGCGAAg -3'
miRNA:   3'- uaGUACC-------------GCGCGUCgUGCCaGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 53567 0.67 0.626352
Target:  5'- cUCGUGGCucccCGCgAGCACGcGcCGCGAGa -3'
miRNA:   3'- uAGUACCGc---GCG-UCGUGC-CaGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 54621 0.66 0.727789
Target:  5'- -gCcgGGCGCGCcccggggggaAGCgGCGG-CGCGAGc -3'
miRNA:   3'- uaGuaCCGCGCG----------UCG-UGCCaGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 58408 0.81 0.097672
Target:  5'- -cCAUGGCGCGCAGCugGGcgUGCGGc -3'
miRNA:   3'- uaGUACCGCGCGUCGugCCa-GCGCUu -5'
29427 3' -59.3 NC_006151.1 + 58445 0.71 0.421895
Target:  5'- --gGUGGCGUGCGcgcGCGCGGcgUCGCGGu -3'
miRNA:   3'- uagUACCGCGCGU---CGUGCC--AGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 60186 0.7 0.486327
Target:  5'- -aCGUGGUucaGCAGCACGGgCGUGAAg -3'
miRNA:   3'- uaGUACCGcg-CGUCGUGCCaGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 62051 0.66 0.717869
Target:  5'- -gCGUGGCgGUGCAcGCGCGcgccGUCGUGAc -3'
miRNA:   3'- uaGUACCG-CGCGU-CGUGC----CAGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 63517 0.76 0.206097
Target:  5'- ----gGGCGCGCGGgGCGGUCGgGGAa -3'
miRNA:   3'- uaguaCCGCGCGUCgUGCCAGCgCUU- -5'
29427 3' -59.3 NC_006151.1 + 64560 0.67 0.616094
Target:  5'- -cCGUGGCGCGCcagcucgacgAGCA-GGUCGUGc- -3'
miRNA:   3'- uaGUACCGCGCG----------UCGUgCCAGCGCuu -5'
29427 3' -59.3 NC_006151.1 + 65172 0.69 0.525173
Target:  5'- ----cGGCGCGCgaggcggaAGCGCGGgucCGCGAGc -3'
miRNA:   3'- uaguaCCGCGCG--------UCGUGCCa--GCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 68250 0.77 0.186514
Target:  5'- cGUCAgguagacGCGCGCGGCgACGGUCGCGGc -3'
miRNA:   3'- -UAGUac-----CGCGCGUCG-UGCCAGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 68908 0.67 0.636613
Target:  5'- cUCGcGGuCGCGCGG-GCGGaUCGCGAAc -3'
miRNA:   3'- uAGUaCC-GCGCGUCgUGCC-AGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 68941 0.66 0.687702
Target:  5'- gAUC-UGGCGCau-GCGCGGcUCGCGGc -3'
miRNA:   3'- -UAGuACCGCGcguCGUGCC-AGCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.