miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29427 3' -59.3 NC_006151.1 + 97772 1.04 0.002247
Target:  5'- gAUCAUGGCGCGCAGCACGGUCGCGAAg -3'
miRNA:   3'- -UAGUACCGCGCGUCGUGCCAGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 58408 0.81 0.097672
Target:  5'- -cCAUGGCGCGCAGCugGGcgUGCGGc -3'
miRNA:   3'- uaGUACCGCGCGUCGugCCa-GCGCUu -5'
29427 3' -59.3 NC_006151.1 + 118789 0.78 0.144593
Target:  5'- --gGUGGCGCGCGGCGCGG-CGCa-- -3'
miRNA:   3'- uagUACCGCGCGUCGUGCCaGCGcuu -5'
29427 3' -59.3 NC_006151.1 + 73379 0.78 0.148363
Target:  5'- cGUCAcgggGGCGCGCAGCGCGGcCGCc-- -3'
miRNA:   3'- -UAGUa---CCGCGCGUCGUGCCaGCGcuu -5'
29427 3' -59.3 NC_006151.1 + 118128 0.78 0.166038
Target:  5'- cUCGUGGCGCGCAGCgccgacgacgccgcgGCGGUgGCGc- -3'
miRNA:   3'- uAGUACCGCGCGUCG---------------UGCCAgCGCuu -5'
29427 3' -59.3 NC_006151.1 + 68250 0.77 0.186514
Target:  5'- cGUCAgguagacGCGCGCGGCgACGGUCGCGGc -3'
miRNA:   3'- -UAGUac-----CGCGCGUCG-UGCCAGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 97802 0.76 0.206097
Target:  5'- cUCA-GGCGCGCGGCcgugcgcCGGUCGCGGu -3'
miRNA:   3'- uAGUaCCGCGCGUCGu------GCCAGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 63517 0.76 0.206097
Target:  5'- ----gGGCGCGCGGgGCGGUCGgGGAa -3'
miRNA:   3'- uaguaCCGCGCGUCgUGCCAGCgCUU- -5'
29427 3' -59.3 NC_006151.1 + 75451 0.76 0.21654
Target:  5'- -gCGUGGCGCGCGuaGCGGUCgGCGGc -3'
miRNA:   3'- uaGUACCGCGCGUcgUGCCAG-CGCUu -5'
29427 3' -59.3 NC_006151.1 + 111543 0.75 0.238788
Target:  5'- cAUCAUGGCGCGCAGC--GGcCGCGu- -3'
miRNA:   3'- -UAGUACCGCGCGUCGugCCaGCGCuu -5'
29427 3' -59.3 NC_006151.1 + 102401 0.75 0.24464
Target:  5'- gGUCGcGGCGCGCGucGCGCGGccCGCGAAc -3'
miRNA:   3'- -UAGUaCCGCGCGU--CGUGCCa-GCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 17631 0.75 0.250611
Target:  5'- -cCAUGGCGCG-AGCGCGuUCGCGAc -3'
miRNA:   3'- uaGUACCGCGCgUCGUGCcAGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 135422 0.74 0.275702
Target:  5'- cUCGUGGCGCGCcaGGCACuccaGGUUGCGc- -3'
miRNA:   3'- uAGUACCGCGCG--UCGUG----CCAGCGCuu -5'
29427 3' -59.3 NC_006151.1 + 17406 0.73 0.302762
Target:  5'- -gCGUGGCGCGCGGCAgcaGGgccaGCGAGc -3'
miRNA:   3'- uaGUACCGCGCGUCGUg--CCag--CGCUU- -5'
29427 3' -59.3 NC_006151.1 + 115948 0.73 0.33182
Target:  5'- -gCcgGGCGCGCgAGCGCGagcGUCGUGAAg -3'
miRNA:   3'- uaGuaCCGCGCG-UCGUGC---CAGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 137125 0.72 0.379145
Target:  5'- ----gGGCGCGCgacGGCGCGG-CGCGAc -3'
miRNA:   3'- uaguaCCGCGCG---UCGUGCCaGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 19273 0.72 0.388299
Target:  5'- cUCGUGGCGCGCGGggcccaccggggccaGCGG-CGCGGg -3'
miRNA:   3'- uAGUACCGCGCGUCg--------------UGCCaGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 58445 0.71 0.421895
Target:  5'- --gGUGGCGUGCGcgcGCGCGGcgUCGCGGu -3'
miRNA:   3'- uagUACCGCGCGU---CGUGCC--AGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 97488 0.7 0.448897
Target:  5'- -aCGUGGaCGCGCAGCGCc-UCGCGGc -3'
miRNA:   3'- uaGUACC-GCGCGUCGUGccAGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 76664 0.7 0.448897
Target:  5'- ----gGGCGCGUGuGCGCGGUCGCu-- -3'
miRNA:   3'- uaguaCCGCGCGU-CGUGCCAGCGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.