Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29427 | 3' | -59.3 | NC_006151.1 | + | 97844 | 0.7 | 0.467418 |
Target: 5'- -aCGUGcGCGCGCAGCGCGucGUcCGCGu- -3' miRNA: 3'- uaGUAC-CGCGCGUCGUGC--CA-GCGCuu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 130033 | 0.7 | 0.467418 |
Target: 5'- cGUCGUGaGCcaGCGCAGCGCGuGgugcaUCGCGAGc -3' miRNA: 3'- -UAGUAC-CG--CGCGUCGUGC-C-----AGCGCUU- -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 52603 | 0.7 | 0.475881 |
Target: 5'- -gCGUGGacgaaggcgucguCGCGCAGgACGGcCGCGAAg -3' miRNA: 3'- uaGUACC-------------GCGCGUCgUGCCaGCGCUU- -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 76190 | 0.7 | 0.476826 |
Target: 5'- --gAUGGCGCGCAgccGCAUGGcCGaCGAGa -3' miRNA: 3'- uagUACCGCGCGU---CGUGCCaGC-GCUU- -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 90998 | 0.7 | 0.486327 |
Target: 5'- ---cUGGCGCGCuccAGCACGGcggucccgUCGCGGu -3' miRNA: 3'- uaguACCGCGCG---UCGUGCC--------AGCGCUu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 60186 | 0.7 | 0.486327 |
Target: 5'- -aCGUGGUucaGCAGCACGGgCGUGAAg -3' miRNA: 3'- uaGUACCGcg-CGUCGUGCCaGCGCUU- -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 138225 | 0.69 | 0.50559 |
Target: 5'- uUCAacgGGCGCGC-GCACGaGUaCGCGGg -3' miRNA: 3'- uAGUa--CCGCGCGuCGUGC-CA-GCGCUu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 118933 | 0.69 | 0.515344 |
Target: 5'- cGUCAUGaGCGCcgacGCGGCGCuGUCGCuGGAg -3' miRNA: 3'- -UAGUAC-CGCG----CGUCGUGcCAGCG-CUU- -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 102545 | 0.69 | 0.525173 |
Target: 5'- gGUgGUGGCGCGC-GCGCGGgcccuguuugCGCGc- -3' miRNA: 3'- -UAgUACCGCGCGuCGUGCCa---------GCGCuu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 65172 | 0.69 | 0.525173 |
Target: 5'- ----cGGCGCGCgaggcggaAGCGCGGgucCGCGAGc -3' miRNA: 3'- uaguaCCGCGCG--------UCGUGCCa--GCGCUU- -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 16979 | 0.69 | 0.535072 |
Target: 5'- -gCGUGGCGC-CAGgaGCGGUUGUGGAc -3' miRNA: 3'- uaGUACCGCGcGUCg-UGCCAGCGCUU- -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 95163 | 0.69 | 0.545036 |
Target: 5'- -cCAUGuccaGCGC-CAGCACGGUCGUGu- -3' miRNA: 3'- uaGUAC----CGCGcGUCGUGCCAGCGCuu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 102498 | 0.68 | 0.55506 |
Target: 5'- uUCAUGGaCGcCGCGGCGCGGgaccccgGCGGc -3' miRNA: 3'- uAGUACC-GC-GCGUCGUGCCag-----CGCUu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 117064 | 0.68 | 0.55506 |
Target: 5'- gGUCGUGGuCGaGCAGCAggcgcgUGGUCGCGu- -3' miRNA: 3'- -UAGUACC-GCgCGUCGU------GCCAGCGCuu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 89851 | 0.68 | 0.565137 |
Target: 5'- -gCGUgGGUGUGCGGgACGGUCGCc-- -3' miRNA: 3'- uaGUA-CCGCGCGUCgUGCCAGCGcuu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 105285 | 0.68 | 0.575261 |
Target: 5'- ----gGGCGCGC-GCGCGGcCGCGc- -3' miRNA: 3'- uaguaCCGCGCGuCGUGCCaGCGCuu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 131961 | 0.68 | 0.594603 |
Target: 5'- ----gGGCGgGCGGCAguacgugUGGUCGCGGu -3' miRNA: 3'- uaguaCCGCgCGUCGU-------GCCAGCGCUu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 131739 | 0.68 | 0.595624 |
Target: 5'- --gGUGGCGgGCccgGGCgaggcgaccgucGCGGUCGCGAc -3' miRNA: 3'- uagUACCGCgCG---UCG------------UGCCAGCGCUu -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 103960 | 0.68 | 0.595624 |
Target: 5'- cUCGcGGCGCGcCAGCGC-GUCgGCGAGc -3' miRNA: 3'- uAGUaCCGCGC-GUCGUGcCAG-CGCUU- -5' |
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29427 | 3' | -59.3 | NC_006151.1 | + | 81568 | 0.68 | 0.595624 |
Target: 5'- -cCGUGGUGCGgAGCAgGGucUCGCGc- -3' miRNA: 3'- uaGUACCGCGCgUCGUgCC--AGCGCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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