miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29427 3' -59.3 NC_006151.1 + 69639 0.67 0.657118
Target:  5'- cGUCccGcGCGUGCGGCGCcgccgGGUCGuCGAAg -3'
miRNA:   3'- -UAGuaC-CGCGCGUCGUG-----CCAGC-GCUU- -5'
29427 3' -59.3 NC_006151.1 + 127986 0.67 0.657118
Target:  5'- cUCGUgcGGCGgcucCGCGuCGCGGUCGCGGGg -3'
miRNA:   3'- uAGUA--CCGC----GCGUcGUGCCAGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 135922 0.67 0.646871
Target:  5'- gGUCGUGcGCGCGCucuGcCGCGGggagccccUCGCGGc -3'
miRNA:   3'- -UAGUAC-CGCGCGu--C-GUGCC--------AGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 101539 0.67 0.640717
Target:  5'- uUCGUGGCGCGCcuGCgcccgGCGGacguguacgcgcacgUCGCGGg -3'
miRNA:   3'- uAGUACCGCGCGu-CG-----UGCC---------------AGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 132754 0.67 0.636613
Target:  5'- -cCAUGGCGCccaGCAGCGcCGGgcccUCGuCGAAg -3'
miRNA:   3'- uaGUACCGCG---CGUCGU-GCC----AGC-GCUU- -5'
29427 3' -59.3 NC_006151.1 + 4342 0.67 0.636613
Target:  5'- ----cGGCGaagGCGGCGCGGaCGCGGg -3'
miRNA:   3'- uaguaCCGCg--CGUCGUGCCaGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 68908 0.67 0.636613
Target:  5'- cUCGcGGuCGCGCGG-GCGGaUCGCGAAc -3'
miRNA:   3'- uAGUaCC-GCGCGUCgUGCC-AGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 115574 0.67 0.636613
Target:  5'- ----gGGCGCGCgGGCA-GGUCGCGc- -3'
miRNA:   3'- uaguaCCGCGCG-UCGUgCCAGCGCuu -5'
29427 3' -59.3 NC_006151.1 + 139640 0.67 0.636613
Target:  5'- ----cGGCGC-CGGCGCGGgggUCGCGGc -3'
miRNA:   3'- uaguaCCGCGcGUCGUGCC---AGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 53567 0.67 0.626352
Target:  5'- cUCGUGGCucccCGCgAGCACGcGcCGCGAGa -3'
miRNA:   3'- uAGUACCGc---GCG-UCGUGC-CaGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 102694 0.67 0.626352
Target:  5'- ----gGGCGCcCGGCGCGGgcggCGCGGc -3'
miRNA:   3'- uaguaCCGCGcGUCGUGCCa---GCGCUu -5'
29427 3' -59.3 NC_006151.1 + 120758 0.67 0.626352
Target:  5'- cGUCAUGGCcuggGUGCGGCgcccgcugGCGGaCGCGGc -3'
miRNA:   3'- -UAGUACCG----CGCGUCG--------UGCCaGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 134202 0.67 0.626352
Target:  5'- cUCGU--CGCGCAGCGCGGggGCGGu -3'
miRNA:   3'- uAGUAccGCGCGUCGUGCCagCGCUu -5'
29427 3' -59.3 NC_006151.1 + 83360 0.67 0.626352
Target:  5'- ----cGGCGCGC-GCGCGGgCGCGc- -3'
miRNA:   3'- uaguaCCGCGCGuCGUGCCaGCGCuu -5'
29427 3' -59.3 NC_006151.1 + 90752 0.67 0.626352
Target:  5'- cUCGggGGCG-GCgGGCACGGUgGCGGGg -3'
miRNA:   3'- uAGUa-CCGCgCG-UCGUGCCAgCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 136994 0.67 0.626352
Target:  5'- -gCGgcgGGCGCGCGcGCACGG-CGCu-- -3'
miRNA:   3'- uaGUa--CCGCGCGU-CGUGCCaGCGcuu -5'
29427 3' -59.3 NC_006151.1 + 105782 0.67 0.616094
Target:  5'- cGUCAUcgcacGGUGCGCgaGGCGCGGagcgaCGCGGAc -3'
miRNA:   3'- -UAGUA-----CCGCGCG--UCGUGCCa----GCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 64560 0.67 0.616094
Target:  5'- -cCGUGGCGCGCcagcucgacgAGCA-GGUCGUGc- -3'
miRNA:   3'- uaGUACCGCGCG----------UCGUgCCAGCGCuu -5'
29427 3' -59.3 NC_006151.1 + 86554 0.67 0.615069
Target:  5'- -cCGUGGCGCcguuccgGCAGCucuCGG-CGCGGg -3'
miRNA:   3'- uaGUACCGCG-------CGUCGu--GCCaGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 81568 0.68 0.595624
Target:  5'- -cCGUGGUGCGgAGCAgGGucUCGCGc- -3'
miRNA:   3'- uaGUACCGCGCgUCGUgCC--AGCGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.