miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29427 3' -59.3 NC_006151.1 + 81568 0.68 0.595624
Target:  5'- -cCGUGGUGCGgAGCAgGGucUCGCGc- -3'
miRNA:   3'- uaGUACCGCGCgUCGUgCC--AGCGCuu -5'
29427 3' -59.3 NC_006151.1 + 103960 0.68 0.595624
Target:  5'- cUCGcGGCGCGcCAGCGC-GUCgGCGAGc -3'
miRNA:   3'- uAGUaCCGCGC-GUCGUGcCAG-CGCUU- -5'
29427 3' -59.3 NC_006151.1 + 131961 0.68 0.594603
Target:  5'- ----gGGCGgGCGGCAguacgugUGGUCGCGGu -3'
miRNA:   3'- uaguaCCGCgCGUCGU-------GCCAGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 105285 0.68 0.575261
Target:  5'- ----gGGCGCGC-GCGCGGcCGCGc- -3'
miRNA:   3'- uaguaCCGCGCGuCGUGCCaGCGCuu -5'
29427 3' -59.3 NC_006151.1 + 89851 0.68 0.565137
Target:  5'- -gCGUgGGUGUGCGGgACGGUCGCc-- -3'
miRNA:   3'- uaGUA-CCGCGCGUCgUGCCAGCGcuu -5'
29427 3' -59.3 NC_006151.1 + 117064 0.68 0.55506
Target:  5'- gGUCGUGGuCGaGCAGCAggcgcgUGGUCGCGu- -3'
miRNA:   3'- -UAGUACC-GCgCGUCGU------GCCAGCGCuu -5'
29427 3' -59.3 NC_006151.1 + 102498 0.68 0.55506
Target:  5'- uUCAUGGaCGcCGCGGCGCGGgaccccgGCGGc -3'
miRNA:   3'- uAGUACC-GC-GCGUCGUGCCag-----CGCUu -5'
29427 3' -59.3 NC_006151.1 + 95163 0.69 0.545036
Target:  5'- -cCAUGuccaGCGC-CAGCACGGUCGUGu- -3'
miRNA:   3'- uaGUAC----CGCGcGUCGUGCCAGCGCuu -5'
29427 3' -59.3 NC_006151.1 + 16979 0.69 0.535072
Target:  5'- -gCGUGGCGC-CAGgaGCGGUUGUGGAc -3'
miRNA:   3'- uaGUACCGCGcGUCg-UGCCAGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 102545 0.69 0.525173
Target:  5'- gGUgGUGGCGCGC-GCGCGGgcccuguuugCGCGc- -3'
miRNA:   3'- -UAgUACCGCGCGuCGUGCCa---------GCGCuu -5'
29427 3' -59.3 NC_006151.1 + 65172 0.69 0.525173
Target:  5'- ----cGGCGCGCgaggcggaAGCGCGGgucCGCGAGc -3'
miRNA:   3'- uaguaCCGCGCG--------UCGUGCCa--GCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 118933 0.69 0.515344
Target:  5'- cGUCAUGaGCGCcgacGCGGCGCuGUCGCuGGAg -3'
miRNA:   3'- -UAGUAC-CGCG----CGUCGUGcCAGCG-CUU- -5'
29427 3' -59.3 NC_006151.1 + 138225 0.69 0.50559
Target:  5'- uUCAacgGGCGCGC-GCACGaGUaCGCGGg -3'
miRNA:   3'- uAGUa--CCGCGCGuCGUGC-CA-GCGCUu -5'
29427 3' -59.3 NC_006151.1 + 60186 0.7 0.486327
Target:  5'- -aCGUGGUucaGCAGCACGGgCGUGAAg -3'
miRNA:   3'- uaGUACCGcg-CGUCGUGCCaGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 90998 0.7 0.486327
Target:  5'- ---cUGGCGCGCuccAGCACGGcggucccgUCGCGGu -3'
miRNA:   3'- uaguACCGCGCG---UCGUGCC--------AGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 76190 0.7 0.476826
Target:  5'- --gAUGGCGCGCAgccGCAUGGcCGaCGAGa -3'
miRNA:   3'- uagUACCGCGCGU---CGUGCCaGC-GCUU- -5'
29427 3' -59.3 NC_006151.1 + 52603 0.7 0.475881
Target:  5'- -gCGUGGacgaaggcgucguCGCGCAGgACGGcCGCGAAg -3'
miRNA:   3'- uaGUACC-------------GCGCGUCgUGCCaGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 130033 0.7 0.467418
Target:  5'- cGUCGUGaGCcaGCGCAGCGCGuGgugcaUCGCGAGc -3'
miRNA:   3'- -UAGUAC-CG--CGCGUCGUGC-C-----AGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 97844 0.7 0.467418
Target:  5'- -aCGUGcGCGCGCAGCGCGucGUcCGCGu- -3'
miRNA:   3'- uaGUAC-CGCGCGUCGUGC--CA-GCGCuu -5'
29427 3' -59.3 NC_006151.1 + 97488 0.7 0.448897
Target:  5'- -aCGUGGaCGCGCAGCGCc-UCGCGGc -3'
miRNA:   3'- uaGUACC-GCGCGUCGUGccAGCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.