miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29427 3' -59.3 NC_006151.1 + 141417 0.66 0.687702
Target:  5'- gAUCgGUGcGgGCGCGGCcCGG-CGCGAAc -3'
miRNA:   3'- -UAG-UAC-CgCGCGUCGuGCCaGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 139640 0.67 0.636613
Target:  5'- ----cGGCGC-CGGCGCGGgggUCGCGGc -3'
miRNA:   3'- uaguaCCGCGcGUCGUGCC---AGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 138225 0.69 0.50559
Target:  5'- uUCAacgGGCGCGC-GCACGaGUaCGCGGg -3'
miRNA:   3'- uAGUa--CCGCGCGuCGUGC-CA-GCGCUu -5'
29427 3' -59.3 NC_006151.1 + 137125 0.72 0.379145
Target:  5'- ----gGGCGCGCgacGGCGCGG-CGCGAc -3'
miRNA:   3'- uaguaCCGCGCG---UCGUGCCaGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 136994 0.67 0.626352
Target:  5'- -gCGgcgGGCGCGCGcGCACGG-CGCu-- -3'
miRNA:   3'- uaGUa--CCGCGCGU-CGUGCCaGCGcuu -5'
29427 3' -59.3 NC_006151.1 + 135922 0.67 0.646871
Target:  5'- gGUCGUGcGCGCGCucuGcCGCGGggagccccUCGCGGc -3'
miRNA:   3'- -UAGUAC-CGCGCGu--C-GUGCC--------AGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 135422 0.74 0.275702
Target:  5'- cUCGUGGCGCGCcaGGCACuccaGGUUGCGc- -3'
miRNA:   3'- uAGUACCGCGCG--UCGUG----CCAGCGCuu -5'
29427 3' -59.3 NC_006151.1 + 134990 0.66 0.717869
Target:  5'- cUCGggcgGGCGCGUcuuGGCGgGGgCGCGGGg -3'
miRNA:   3'- uAGUa---CCGCGCG---UCGUgCCaGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 134202 0.67 0.626352
Target:  5'- cUCGU--CGCGCAGCGCGGggGCGGu -3'
miRNA:   3'- uAGUAccGCGCGUCGUGCCagCGCUu -5'
29427 3' -59.3 NC_006151.1 + 133325 0.66 0.707875
Target:  5'- uGUCGaGGCGCGCcgGGCGgcCGGUucCGCGGc -3'
miRNA:   3'- -UAGUaCCGCGCG--UCGU--GCCA--GCGCUu -5'
29427 3' -59.3 NC_006151.1 + 132754 0.67 0.636613
Target:  5'- -cCAUGGCGCccaGCAGCGcCGGgcccUCGuCGAAg -3'
miRNA:   3'- uaGUACCGCG---CGUCGU-GCC----AGC-GCUU- -5'
29427 3' -59.3 NC_006151.1 + 131961 0.68 0.594603
Target:  5'- ----gGGCGgGCGGCAguacgugUGGUCGCGGu -3'
miRNA:   3'- uaguaCCGCgCGUCGU-------GCCAGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 131739 0.68 0.595624
Target:  5'- --gGUGGCGgGCccgGGCgaggcgaccgucGCGGUCGCGAc -3'
miRNA:   3'- uagUACCGCgCG---UCG------------UGCCAGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 130269 0.66 0.687702
Target:  5'- ----cGGCGCGCGGCcccgaGGcCGCGGg -3'
miRNA:   3'- uaguaCCGCGCGUCGug---CCaGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 130033 0.7 0.467418
Target:  5'- cGUCGUGaGCcaGCGCAGCGCGuGgugcaUCGCGAGc -3'
miRNA:   3'- -UAGUAC-CG--CGCGUCGUGC-C-----AGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 129749 0.66 0.677542
Target:  5'- ----aGGCGCuGCAGCACcagCGCGAAg -3'
miRNA:   3'- uaguaCCGCG-CGUCGUGccaGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 129403 0.66 0.717869
Target:  5'- --gGUGGCGCGCGGCGuauucggcgaGGUCGaCGu- -3'
miRNA:   3'- uagUACCGCGCGUCGUg---------CCAGC-GCuu -5'
29427 3' -59.3 NC_006151.1 + 127986 0.67 0.657118
Target:  5'- cUCGUgcGGCGgcucCGCGuCGCGGUCGCGGGg -3'
miRNA:   3'- uAGUA--CCGC----GCGUcGUGCCAGCGCUU- -5'
29427 3' -59.3 NC_006151.1 + 120758 0.67 0.626352
Target:  5'- cGUCAUGGCcuggGUGCGGCgcccgcugGCGGaCGCGGc -3'
miRNA:   3'- -UAGUACCG----CGCGUCG--------UGCCaGCGCUu -5'
29427 3' -59.3 NC_006151.1 + 120186 0.66 0.701847
Target:  5'- cAUCGUGGCcccggaccccaccaaGgGCAGCGCGGagcccccggcgCGCGAc -3'
miRNA:   3'- -UAGUACCG---------------CgCGUCGUGCCa----------GCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.