miRNA display CGI


Results 41 - 60 of 444 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29427 5' -65.4 NC_006151.1 + 10621 0.66 0.501533
Target:  5'- cGCGCGCccgCGUGCgcucguGCCGG-CGCGGc -3'
miRNA:   3'- cCGCGCGccgGCACG------CGGCCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 10945 0.69 0.361773
Target:  5'- gGGCGCGCGuGuCCGUGUGagaguuuaCGGU-GUGGu -3'
miRNA:   3'- -CCGCGCGC-C-GGCACGCg-------GCCAgCGCC- -5'
29427 5' -65.4 NC_006151.1 + 13680 0.66 0.510519
Target:  5'- gGGaCGCGcCGGCCaaUGCGggcucCCGGgaCGCGGg -3'
miRNA:   3'- -CC-GCGC-GCCGGc-ACGC-----GGCCa-GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 15049 0.74 0.182785
Target:  5'- cGGCGCGCGGggccCCG-GCGCCuucugCGCGGc -3'
miRNA:   3'- -CCGCGCGCC----GGCaCGCGGcca--GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 17093 0.75 0.155075
Target:  5'- aGGCGCGCGcCCGUcgggGCGCCGGgggcuccgGCGGc -3'
miRNA:   3'- -CCGCGCGCcGGCA----CGCGGCCag------CGCC- -5'
29427 5' -65.4 NC_006151.1 + 17409 0.69 0.369218
Target:  5'- uGGCGCGCGGCagcaGgGCcagcgaGCCGGggGCGa -3'
miRNA:   3'- -CCGCGCGCCGg---CaCG------CGGCCagCGCc -5'
29427 5' -65.4 NC_006151.1 + 18693 0.81 0.059761
Target:  5'- gGGCGCGCGGgCG-GCGCCGGcgUCGUGa -3'
miRNA:   3'- -CCGCGCGCCgGCaCGCGGCC--AGCGCc -5'
29427 5' -65.4 NC_006151.1 + 19001 0.68 0.392176
Target:  5'- cGGCGCGCcaccaGCCGcgcgcGCGCCGG-CGaGGu -3'
miRNA:   3'- -CCGCGCGc----CGGCa----CGCGGCCaGCgCC- -5'
29427 5' -65.4 NC_006151.1 + 19277 0.72 0.235681
Target:  5'- uGGCGCGCGGggcccaCCGgggccagcggcgcggGCgGCCGGUCGCc- -3'
miRNA:   3'- -CCGCGCGCC------GGCa--------------CG-CGGCCAGCGcc -5'
29427 5' -65.4 NC_006151.1 + 19738 0.68 0.38442
Target:  5'- cGCGCgGCGGUCGU-CGCCguugaGGUCGCc- -3'
miRNA:   3'- cCGCG-CGCCGGCAcGCGG-----CCAGCGcc -5'
29427 5' -65.4 NC_006151.1 + 20121 0.67 0.449204
Target:  5'- cGGCGaCGgGGCUGggGgGCgGGcgcCGCGGg -3'
miRNA:   3'- -CCGC-GCgCCGGCa-CgCGgCCa--GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 20155 0.81 0.059761
Target:  5'- cGGCGCGUGGaCCGccgggccGCGCCcgGGUCGCGGc -3'
miRNA:   3'- -CCGCGCGCC-GGCa------CGCGG--CCAGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 20448 0.7 0.299548
Target:  5'- cGGaGCGgGGCuCGggggugGCGCCGGUcccccgggggggCGCGGg -3'
miRNA:   3'- -CCgCGCgCCG-GCa-----CGCGGCCA------------GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 20753 0.71 0.268713
Target:  5'- cGGCGCgccuccaccGCGGCgGacgcGCGCCGGgcgaGCGGc -3'
miRNA:   3'- -CCGCG---------CGCCGgCa---CGCGGCCag--CGCC- -5'
29427 5' -65.4 NC_006151.1 + 21401 0.68 0.427479
Target:  5'- cGGgGCGaaggGGCgGUGCGgCgucucgggccucgggGGUCGCGGc -3'
miRNA:   3'- -CCgCGCg---CCGgCACGCgG---------------CCAGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 21474 0.69 0.376768
Target:  5'- cGCGuCGcCGGCuCGggcagGCgGCCGGggggCGCGGg -3'
miRNA:   3'- cCGC-GC-GCCG-GCa----CG-CGGCCa---GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 21520 0.66 0.547088
Target:  5'- gGGCGgGCucgggcuucGGCCG-GgGCCGGggcCGgGGc -3'
miRNA:   3'- -CCGCgCG---------CCGGCaCgCGGCCa--GCgCC- -5'
29427 5' -65.4 NC_006151.1 + 21585 0.68 0.424192
Target:  5'- cGCGCGgGGUCGaugGCGUaCGG-CGUGGc -3'
miRNA:   3'- cCGCGCgCCGGCa--CGCG-GCCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 23001 0.68 0.432438
Target:  5'- cGGcCGCGCGGgUGgggGCGCgggGGUgGUGGa -3'
miRNA:   3'- -CC-GCGCGCCgGCa--CGCGg--CCAgCGCC- -5'
29427 5' -65.4 NC_006151.1 + 23410 0.66 0.510519
Target:  5'- aGCGC-UGGUgGU-CGCCGGcCGUGGg -3'
miRNA:   3'- cCGCGcGCCGgCAcGCGGCCaGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.