miRNA display CGI


Results 21 - 40 of 444 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29427 5' -65.4 NC_006151.1 + 4319 0.73 0.209935
Target:  5'- gGGCaCGCGGCCGggcUGCGCggcggcgaaggCGG-CGCGGa -3'
miRNA:   3'- -CCGcGCGCCGGC---ACGCG-----------GCCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 4616 0.7 0.333747
Target:  5'- gGGCGCGUGgacccggcGCUGgcagaacugguugaaGCGCUGGUCGgGGg -3'
miRNA:   3'- -CCGCGCGC--------CGGCa--------------CGCGGCCAGCgCC- -5'
29427 5' -65.4 NC_006151.1 + 4792 0.67 0.457721
Target:  5'- cGGC-CGCGGCgCGguaGCgGGcCGCGGc -3'
miRNA:   3'- -CCGcGCGCCG-GCacgCGgCCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 4864 0.66 0.500638
Target:  5'- cGGCGCcgccguagcggacGCGGCCGUcgGCCGGagGguCGGa -3'
miRNA:   3'- -CCGCG-------------CGCCGGCAcgCGGCCagC--GCC- -5'
29427 5' -65.4 NC_006151.1 + 4930 0.68 0.392176
Target:  5'- gGGUGagcaGCGGCC---CGUCGGUCgGCGGg -3'
miRNA:   3'- -CCGCg---CGCCGGcacGCGGCCAG-CGCC- -5'
29427 5' -65.4 NC_006151.1 + 5019 0.7 0.299548
Target:  5'- gGGCGgGCuccggGGCCG-GgGCCGGggaggcCGCGGc -3'
miRNA:   3'- -CCGCgCG-----CCGGCaCgCGGCCa-----GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 5080 0.71 0.262862
Target:  5'- gGGcCGCGgGGCCGcggcggGCGCCGGcggagacggUgGCGGc -3'
miRNA:   3'- -CC-GCGCgCCGGCa-----CGCGGCC---------AgCGCC- -5'
29427 5' -65.4 NC_006151.1 + 5124 0.66 0.501533
Target:  5'- cGGCGCG-GGCgaGUgggGCGCCGGgC-CGGa -3'
miRNA:   3'- -CCGCGCgCCGg-CA---CGCGGCCaGcGCC- -5'
29427 5' -65.4 NC_006151.1 + 5247 0.66 0.492617
Target:  5'- cGGCG-GCGGCgGggGC-CCGGgggGCGGa -3'
miRNA:   3'- -CCGCgCGCCGgCa-CGcGGCCag-CGCC- -5'
29427 5' -65.4 NC_006151.1 + 5349 0.69 0.369218
Target:  5'- gGGCGCccucucCGGCgCG-GCGCCGG-CGgGGc -3'
miRNA:   3'- -CCGCGc-----GCCG-GCaCGCGGCCaGCgCC- -5'
29427 5' -65.4 NC_006151.1 + 5520 0.69 0.347199
Target:  5'- gGGCGCcaaGCGGCCGagGaucgaGCCGccUCGCGGc -3'
miRNA:   3'- -CCGCG---CGCCGGCa-Cg----CGGCc-AGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 5698 0.71 0.279509
Target:  5'- cGGCGCuGCGGCCaccgcugcuggcUGUGCUGGUgGCGc -3'
miRNA:   3'- -CCGCG-CGCCGGc-----------ACGCGGCCAgCGCc -5'
29427 5' -65.4 NC_006151.1 + 6392 0.7 0.326135
Target:  5'- --aGCGaGGCCGgGCGCCGaG-CGCGGa -3'
miRNA:   3'- ccgCGCgCCGGCaCGCGGC-CaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 7663 0.68 0.400032
Target:  5'- cGGCGCGCGcuCCGaggGCGCCccagccGGUCggagagacgaGCGGa -3'
miRNA:   3'- -CCGCGCGCc-GGCa--CGCGG------CCAG----------CGCC- -5'
29427 5' -65.4 NC_006151.1 + 8329 0.74 0.176913
Target:  5'- gGGCGCGCgGGCCucgaucgcgccCGCCGGaCGCGGa -3'
miRNA:   3'- -CCGCGCG-CCGGcac--------GCGGCCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 8495 0.68 0.432438
Target:  5'- gGGCGgGCGGggagggugucguCUGUGUGUCuGUgCGCGGg -3'
miRNA:   3'- -CCGCgCGCC------------GGCACGCGGcCA-GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 8586 0.68 0.392176
Target:  5'- gGGUGUGagGGCCgGUGCgaguauggggGCCGGU-GCGGg -3'
miRNA:   3'- -CCGCGCg-CCGG-CACG----------CGGCCAgCGCC- -5'
29427 5' -65.4 NC_006151.1 + 9481 0.7 0.299548
Target:  5'- cGGCccccCGCGGCCGcgGCGUgGGagaGCGGg -3'
miRNA:   3'- -CCGc---GCGCCGGCa-CGCGgCCag-CGCC- -5'
29427 5' -65.4 NC_006151.1 + 10202 0.66 0.501533
Target:  5'- cGGCGCgggcgGCGGCUGcagagGCGgcugCGGaCGCGGa -3'
miRNA:   3'- -CCGCG-----CGCCGGCa----CGCg---GCCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 10497 0.73 0.214785
Target:  5'- cGGCGCGCGcccgccGCCGcagGCGCgucccCGG-CGCGGg -3'
miRNA:   3'- -CCGCGCGC------CGGCa--CGCG-----GCCaGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.