miRNA display CGI


Results 1 - 20 of 444 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29427 5' -65.4 NC_006151.1 + 495 0.67 0.440776
Target:  5'- cGCGCGCaacuuccgccGGaCGUGaCGCCGGUCcccaCGGa -3'
miRNA:   3'- cCGCGCG----------CCgGCAC-GCGGCCAGc---GCC- -5'
29427 5' -65.4 NC_006151.1 + 656 0.76 0.128107
Target:  5'- cGGgGCGCGGCCG-GgGCgGGcucCGCGGa -3'
miRNA:   3'- -CCgCGCGCCGGCaCgCGgCCa--GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 2117 0.7 0.312627
Target:  5'- cGGgGC-CGGCCGU-CGCCGc-CGCGGa -3'
miRNA:   3'- -CCgCGcGCCGGCAcGCGGCcaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 2289 0.68 0.407188
Target:  5'- gGGCGCccGCGGCgGcgacgGCGCCcggGGUCagcaccaGCGGg -3'
miRNA:   3'- -CCGCG--CGCCGgCa----CGCGG---CCAG-------CGCC- -5'
29427 5' -65.4 NC_006151.1 + 2373 0.7 0.319327
Target:  5'- aGGCGCGCaacucGGCCGgcagGCcCuCGGggcCGCGGa -3'
miRNA:   3'- -CCGCGCG-----CCGGCa---CGcG-GCCa--GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 2601 0.73 0.209935
Target:  5'- aGGCGCGCGGCgGcaGCGggaccgggguCCGGggcccggCGCGGg -3'
miRNA:   3'- -CCGCGCGCCGgCa-CGC----------GGCCa------GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 2681 0.68 0.407988
Target:  5'- aGGCGCaGCGGCuCG-GCcCCGGggugcagGCGGg -3'
miRNA:   3'- -CCGCG-CGCCG-GCaCGcGGCCag-----CGCC- -5'
29427 5' -65.4 NC_006151.1 + 2811 0.69 0.354433
Target:  5'- cGGCGCacuggGCGGCCGgguccaGgCGGaCGCGGa -3'
miRNA:   3'- -CCGCG-----CGCCGGCacg---CgGCCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 3005 0.66 0.492617
Target:  5'- gGGCGUugagGCGGCCGaugucgggGCGCcCGGUCcaguuccCGGc -3'
miRNA:   3'- -CCGCG----CGCCGGCa-------CGCG-GCCAGc------GCC- -5'
29427 5' -65.4 NC_006151.1 + 3118 0.69 0.361773
Target:  5'- cGGCGCGggucccaGGCCGgGCGCgGGgcgcccUCgGCGGg -3'
miRNA:   3'- -CCGCGCg------CCGGCaCGCGgCC------AG-CGCC- -5'
29427 5' -65.4 NC_006151.1 + 3271 0.79 0.074779
Target:  5'- cGGCGCGCGGCgaUGUGCGCCaGg-GCGGc -3'
miRNA:   3'- -CCGCGCGCCG--GCACGCGGcCagCGCC- -5'
29427 5' -65.4 NC_006151.1 + 3405 0.67 0.466324
Target:  5'- gGGC-CGCGGCgUGUGggucuCGCCGGccgggaCGCGGc -3'
miRNA:   3'- -CCGcGCGCCG-GCAC-----GCGGCCa-----GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 3614 0.69 0.347199
Target:  5'- cGCG-GUGGCCGUG-GCCGucccCGCGGa -3'
miRNA:   3'- cCGCgCGCCGGCACgCGGCca--GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 3696 0.7 0.319327
Target:  5'- gGGCGCGCGGCgCuucuucuUGCGCCgcucgggcgcugGGUC-CGGg -3'
miRNA:   3'- -CCGCGCGCCG-Gc------ACGCGG------------CCAGcGCC- -5'
29427 5' -65.4 NC_006151.1 + 3872 0.72 0.24049
Target:  5'- gGGCGCccGCcGCCGccgGCGCCGG-CGCuGGg -3'
miRNA:   3'- -CCGCG--CGcCGGCa--CGCGGCCaGCG-CC- -5'
29427 5' -65.4 NC_006151.1 + 3931 0.67 0.475009
Target:  5'- aGCGgGggcaGGCCGgGCGCgGGcucCGCGGg -3'
miRNA:   3'- cCGCgCg---CCGGCaCGCGgCCa--GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 3970 0.74 0.162579
Target:  5'- cGCGCgGCGGCCucgGCgaGCCGGcCGCGGc -3'
miRNA:   3'- cCGCG-CGCCGGca-CG--CGGCCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 4027 0.67 0.483775
Target:  5'- cGGCGUagguccagGCGGCCu--CGCgGG-CGCGGg -3'
miRNA:   3'- -CCGCG--------CGCCGGcacGCGgCCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 4108 0.66 0.541545
Target:  5'- gGGCGacagagucCGCGGCC-UGCcgccgcucggccggGCCGGccccggggaucgcgUCGCGGa -3'
miRNA:   3'- -CCGC--------GCGCCGGcACG--------------CGGCC--------------AGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 4208 0.74 0.187084
Target:  5'- gGGCccgaGgGCGGCCGggGCGCgGGcgggCGCGGg -3'
miRNA:   3'- -CCG----CgCGCCGGCa-CGCGgCCa---GCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.