miRNA display CGI


Results 1 - 20 of 444 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29427 5' -65.4 NC_006151.1 + 142138 0.69 0.347199
Target:  5'- uGGCGCcCGauGCC-UGCGCCGG-CGCaGGg -3'
miRNA:   3'- -CCGCGcGC--CGGcACGCGGCCaGCG-CC- -5'
29427 5' -65.4 NC_006151.1 + 141749 0.72 0.251471
Target:  5'- gGGCGCGgGGCgCGcGCcCCGGUgGCGu -3'
miRNA:   3'- -CCGCGCgCCG-GCaCGcGGCCAgCGCc -5'
29427 5' -65.4 NC_006151.1 + 141697 0.66 0.547088
Target:  5'- -aCG-GCGGCUG-GCGgCGGaCGCGGu -3'
miRNA:   3'- ccGCgCGCCGGCaCGCgGCCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 141629 0.67 0.440776
Target:  5'- gGGCGggucgcugcCGCGGCgGcGCGgCGGggcccCGCGGg -3'
miRNA:   3'- -CCGC---------GCGCCGgCaCGCgGCCa----GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 140291 0.66 0.547088
Target:  5'- aGCuCGUGcGCCG-GCGCCGccUGCGGg -3'
miRNA:   3'- cCGcGCGC-CGGCaCGCGGCcaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 139806 0.69 0.339364
Target:  5'- cGCGCGCGccGCCGUcuccgcgacgcacGCGCgGGUCgGCGc -3'
miRNA:   3'- cCGCGCGC--CGGCA-------------CGCGgCCAG-CGCc -5'
29427 5' -65.4 NC_006151.1 + 139619 0.79 0.076657
Target:  5'- cGgGCGCGGCUGggggccauccgGCGCCGG-CGCGGg -3'
miRNA:   3'- cCgCGCGCCGGCa----------CGCGGCCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 139565 0.67 0.475009
Target:  5'- cGGCGCcCGGuCCGcgaGCGCCuGGgcUCGCGc -3'
miRNA:   3'- -CCGCGcGCC-GGCa--CGCGG-CC--AGCGCc -5'
29427 5' -65.4 NC_006151.1 + 138711 0.78 0.091115
Target:  5'- cGGCGCuGCGcGCCGcGCGCgGGUCGUGu -3'
miRNA:   3'- -CCGCG-CGC-CGGCaCGCGgCCAGCGCc -5'
29427 5' -65.4 NC_006151.1 + 138178 0.67 0.483775
Target:  5'- uGGCGgaCGUGGCCaugGCGCCcGUgcUGCGGc -3'
miRNA:   3'- -CCGC--GCGCCGGca-CGCGGcCA--GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 138124 0.66 0.501533
Target:  5'- uGCuGCGCGGCC-UG-GCCguGGaCGCGGa -3'
miRNA:   3'- cCG-CGCGCCGGcACgCGG--CCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 137770 0.77 0.100503
Target:  5'- uGGCGCGCgugcuccagcaGGCCGUGCuGCUGGa-GCGGg -3'
miRNA:   3'- -CCGCGCG-----------CCGGCACG-CGGCCagCGCC- -5'
29427 5' -65.4 NC_006151.1 + 137738 0.71 0.274669
Target:  5'- cGCG-GUGGCCG-GCGCCgacacGGUCcGCGGc -3'
miRNA:   3'- cCGCgCGCCGGCaCGCGG-----CCAG-CGCC- -5'
29427 5' -65.4 NC_006151.1 + 137283 0.67 0.474137
Target:  5'- gGGCacGCucgagGCGGCCaUGCGCgGGUuccgccgCGCGGu -3'
miRNA:   3'- -CCG--CG-----CGCCGGcACGCGgCCA-------GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 137125 0.66 0.510519
Target:  5'- gGGCGCGCgacGGCgCGgcgcgacgcgGCGCCGGagauggcCGCGc -3'
miRNA:   3'- -CCGCGCG---CCG-GCa---------CGCGGCCa------GCGCc -5'
29427 5' -65.4 NC_006151.1 + 137039 0.68 0.432438
Target:  5'- cGGaCGCGUGccccCCG-GCGCCGGUguaccgCGUGGa -3'
miRNA:   3'- -CC-GCGCGCc---GGCaCGCGGCCA------GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 136999 0.72 0.229912
Target:  5'- gGGCGCGCGcGCaCG-GCGCUGGgCGCc- -3'
miRNA:   3'- -CCGCGCGC-CG-GCaCGCGGCCaGCGcc -5'
29427 5' -65.4 NC_006151.1 + 136809 0.74 0.182785
Target:  5'- cGCGCucGCGGCCGacGCGCCG--CGCGGg -3'
miRNA:   3'- cCGCG--CGCCGGCa-CGCGGCcaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 136755 0.71 0.286896
Target:  5'- cGCGCGCcucgccccGGCCauggGCGCCGGcuaCGUGGa -3'
miRNA:   3'- cCGCGCG--------CCGGca--CGCGGCCa--GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 136671 0.68 0.416042
Target:  5'- aGCGCGCGGCCGccGCcuucuuccGCCacgUGCGGg -3'
miRNA:   3'- cCGCGCGCCGGCa-CG--------CGGccaGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.