miRNA display CGI


Results 1 - 20 of 444 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29427 5' -65.4 NC_006151.1 + 97805 1.1 0.000413
Target:  5'- aGGCGCGCGGCCGUGCGCCGGUCGCGGu -3'
miRNA:   3'- -CCGCGCGCCGGCACGCGGCCAGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 105689 0.82 0.050141
Target:  5'- cGGCGCGgGGCCGa-CGCCGG-CGCGGc -3'
miRNA:   3'- -CCGCGCgCCGGCacGCGGCCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 124066 0.81 0.055437
Target:  5'- cGCGCGgaCGGCCGUGCGCgCGGcCGCGa -3'
miRNA:   3'- cCGCGC--GCCGGCACGCG-GCCaGCGCc -5'
29427 5' -65.4 NC_006151.1 + 130269 0.81 0.059314
Target:  5'- cGGCGCGCGGCCccgaggccgcgggcGcGCGCCGGccgacggCGCGGa -3'
miRNA:   3'- -CCGCGCGCCGG--------------CaCGCGGCCa------GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 18693 0.81 0.059761
Target:  5'- gGGCGCGCGGgCG-GCGCCGGcgUCGUGa -3'
miRNA:   3'- -CCGCGCGCCgGCaCGCGGCC--AGCGCc -5'
29427 5' -65.4 NC_006151.1 + 20155 0.81 0.059761
Target:  5'- cGGCGCGUGGaCCGccgggccGCGCCcgGGUCGCGGc -3'
miRNA:   3'- -CCGCGCGCC-GGCa------CGCGG--CCAGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 121290 0.8 0.069409
Target:  5'- gGGCGCGUGGCCGaccgcgacggGCGCUGGagCGUGGa -3'
miRNA:   3'- -CCGCGCGCCGGCa---------CGCGGCCa-GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 3271 0.79 0.074779
Target:  5'- cGGCGCGCGGCgaUGUGCGCCaGg-GCGGc -3'
miRNA:   3'- -CCGCGCGCCG--GCACGCGGcCagCGCC- -5'
29427 5' -65.4 NC_006151.1 + 139619 0.79 0.076657
Target:  5'- cGgGCGCGGCUGggggccauccgGCGCCGG-CGCGGg -3'
miRNA:   3'- cCgCGCGCCGGCa----------CGCGGCCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 75392 0.79 0.078579
Target:  5'- cGGCGCGgGGCgggugCGUGCGCgGGUC-CGGg -3'
miRNA:   3'- -CCGCGCgCCG-----GCACGCGgCCAGcGCC- -5'
29427 5' -65.4 NC_006151.1 + 54400 0.79 0.080547
Target:  5'- cGCGCGCGGCCucgGCGCCGaGgcgcuggCGCGGc -3'
miRNA:   3'- cCGCGCGCCGGca-CGCGGC-Ca------GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 76657 0.79 0.082562
Target:  5'- cGCGUGCgGGCgCGUGUGCgCGGUCGCuGGg -3'
miRNA:   3'- cCGCGCG-CCG-GCACGCG-GCCAGCG-CC- -5'
29427 5' -65.4 NC_006151.1 + 68776 0.79 0.082562
Target:  5'- cGCGCGCGGCgagGUGCGCCGc-CGCGGc -3'
miRNA:   3'- cCGCGCGCCGg--CACGCGGCcaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 100067 0.79 0.085465
Target:  5'- uGCGCGCGGCCGccgaggugcucgagGCGCCGG-CGcCGGc -3'
miRNA:   3'- cCGCGCGCCGGCa-------------CGCGGCCaGC-GCC- -5'
29427 5' -65.4 NC_006151.1 + 123910 0.78 0.086738
Target:  5'- cGGCGCgGCGGCCGUGaCGCgGGcCGCc- -3'
miRNA:   3'- -CCGCG-CGCCGGCAC-GCGgCCaGCGcc -5'
29427 5' -65.4 NC_006151.1 + 97629 0.78 0.088901
Target:  5'- cGGCGCGCGGCCaUGuCGuuGGUgCGCGc -3'
miRNA:   3'- -CCGCGCGCCGGcAC-GCggCCA-GCGCc -5'
29427 5' -65.4 NC_006151.1 + 102377 0.78 0.088901
Target:  5'- cGCGCccGUGGCCaagcugGCGCUGGUCGCGGc -3'
miRNA:   3'- cCGCG--CGCCGGca----CGCGGCCAGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 138711 0.78 0.091115
Target:  5'- cGGCGCuGCGcGCCGcGCGCgGGUCGUGu -3'
miRNA:   3'- -CCGCG-CGC-CGGCaCGCGgCCAGCGCc -5'
29427 5' -65.4 NC_006151.1 + 113081 0.77 0.099769
Target:  5'- aGCGCGCGGCCGUcGcCGCCgccaccgggggcggGGcCGCGGa -3'
miRNA:   3'- cCGCGCGCCGGCA-C-GCGG--------------CCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 137770 0.77 0.100503
Target:  5'- uGGCGCGCgugcuccagcaGGCCGUGCuGCUGGa-GCGGg -3'
miRNA:   3'- -CCGCGCG-----------CCGGCACG-CGGCCagCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.