miRNA display CGI


Results 21 - 40 of 444 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29427 5' -65.4 NC_006151.1 + 97996 0.77 0.102989
Target:  5'- gGGCgGCGUGGCCGcguaggcgGCGCCGGccaggucCGCGGg -3'
miRNA:   3'- -CCG-CGCGCCGGCa-------CGCGGCCa------GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 96560 0.77 0.104
Target:  5'- cGGCGCGCGugauaaacagcGCCGccucgcggcgcgagGCGCCGGgCGCGGg -3'
miRNA:   3'- -CCGCGCGC-----------CGGCa-------------CGCGGCCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 55880 0.77 0.105533
Target:  5'- cGGCGCugucGCGGCggaCGUGCGCCGGgcgaccgaGCGGc -3'
miRNA:   3'- -CCGCG----CGCCG---GCACGCGGCCag------CGCC- -5'
29427 5' -65.4 NC_006151.1 + 81884 0.77 0.108136
Target:  5'- aGGaGCGCcggcGCCGaggcGCGCCGGUCGCGGc -3'
miRNA:   3'- -CCgCGCGc---CGGCa---CGCGGCCAGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 104575 0.77 0.108136
Target:  5'- cGGCGCGCGGaCGUGCugcagGCCGGcggcagcCGCGGc -3'
miRNA:   3'- -CCGCGCGCCgGCACG-----CGGCCa------GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 92164 0.77 0.110799
Target:  5'- uGGC-CGCGGCCGUGCGCgccgaCGG-CGaCGGg -3'
miRNA:   3'- -CCGcGCGCCGGCACGCG-----GCCaGC-GCC- -5'
29427 5' -65.4 NC_006151.1 + 56176 0.77 0.116029
Target:  5'- cGCGUGCucucgcuGGCCGUGcCGCCGGUgGCGc -3'
miRNA:   3'- cCGCGCG-------CCGGCAC-GCGGCCAgCGCc -5'
29427 5' -65.4 NC_006151.1 + 105290 0.77 0.11631
Target:  5'- cGCGCGCGGCC--GCGCCGG-CGCc- -3'
miRNA:   3'- cCGCGCGCCGGcaCGCGGCCaGCGcc -5'
29427 5' -65.4 NC_006151.1 + 98952 0.76 0.119161
Target:  5'- cGGCGCG-GGCCGUggacgaggcgGCGCUGGUgccCGUGGg -3'
miRNA:   3'- -CCGCGCgCCGGCA----------CGCGGCCA---GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 104060 0.76 0.119161
Target:  5'- cGCGCGCGGCCGacgcgGCGCUGcGcCGCGc -3'
miRNA:   3'- cCGCGCGCCGGCa----CGCGGC-CaGCGCc -5'
29427 5' -65.4 NC_006151.1 + 50016 0.76 0.122076
Target:  5'- cGCGCGCGGCCcgcgcgGCGCCcccGGgCGCGGc -3'
miRNA:   3'- cCGCGCGCCGGca----CGCGG---CCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 23889 0.76 0.125058
Target:  5'- aGCGgGUucacgGGCUGgGCGUCGGUCGCGGg -3'
miRNA:   3'- cCGCgCG-----CCGGCaCGCGGCCAGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 71951 0.76 0.128107
Target:  5'- aGCGCGUGGCCGccucgGCGuuG-UCGCGGu -3'
miRNA:   3'- cCGCGCGCCGGCa----CGCggCcAGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 656 0.76 0.128107
Target:  5'- cGGgGCGCGGCCG-GgGCgGGcucCGCGGa -3'
miRNA:   3'- -CCgCGCGCCGGCaCgCGgCCa--GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 135105 0.76 0.131224
Target:  5'- gGGCGgGCGGCgGUaGCGCgCGGg-GCGGg -3'
miRNA:   3'- -CCGCgCGCCGgCA-CGCG-GCCagCGCC- -5'
29427 5' -65.4 NC_006151.1 + 130898 0.76 0.131224
Target:  5'- aGGCG-GCGGCCGUcGCcgucgucggugGCCGGgccCGCGGg -3'
miRNA:   3'- -CCGCgCGCCGGCA-CG-----------CGGCCa--GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 58240 0.76 0.131224
Target:  5'- cGCGCGCcGCCacGCGCCGGccCGCGGg -3'
miRNA:   3'- cCGCGCGcCGGcaCGCGGCCa-GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 96082 0.76 0.13154
Target:  5'- cGCGCGCGGCCG-GCGaagagcaugagcggGGUUGCGGg -3'
miRNA:   3'- cCGCGCGCCGGCaCGCgg------------CCAGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 77943 0.76 0.134412
Target:  5'- gGGCGCGCGGCCcccacgcugagcGUGCGCCcG-CGCcGGu -3'
miRNA:   3'- -CCGCGCGCCGG------------CACGCGGcCaGCG-CC- -5'
29427 5' -65.4 NC_006151.1 + 58627 0.75 0.13767
Target:  5'- aGCGCaGCGGCuCGUagaaggccaGCGCCGGgagggCGCGGc -3'
miRNA:   3'- cCGCG-CGCCG-GCA---------CGCGGCCa----GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.