miRNA display CGI


Results 21 - 40 of 444 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29427 5' -65.4 NC_006151.1 + 82405 0.66 0.53786
Target:  5'- cGCGCccgaggGCGGCCccgagagGCGCgGGcgcucgCGCGGg -3'
miRNA:   3'- cCGCG------CGCCGGca-----CGCGgCCa-----GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 100715 0.66 0.53786
Target:  5'- aGGCGCGCGaggaGCag-GCGCCGccCGCGc -3'
miRNA:   3'- -CCGCGCGC----CGgcaCGCGGCcaGCGCc -5'
29427 5' -65.4 NC_006151.1 + 106793 0.66 0.53786
Target:  5'- uGGC-CGCGGCgGcgGUGCUcGUCGgGGc -3'
miRNA:   3'- -CCGcGCGCCGgCa-CGCGGcCAGCgCC- -5'
29427 5' -65.4 NC_006151.1 + 33303 0.66 0.53786
Target:  5'- gGGCGCGC-GCgCGUGgGaCCGGgacCGGg -3'
miRNA:   3'- -CCGCGCGcCG-GCACgC-GGCCagcGCC- -5'
29427 5' -65.4 NC_006151.1 + 118891 0.66 0.534184
Target:  5'- cGGCGaCGCGGCCGccggcggccucgaGCGCCGcaUgGCGu -3'
miRNA:   3'- -CCGC-GCGCCGGCa------------CGCGGCc-AgCGCc -5'
29427 5' -65.4 NC_006151.1 + 59151 0.66 0.528687
Target:  5'- gGGCGgGUccaGGCCG-GCGUCGcGcagcagCGCGGc -3'
miRNA:   3'- -CCGCgCG---CCGGCaCGCGGC-Ca-----GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 88535 0.66 0.528687
Target:  5'- --aGCGCaGGCgcaCGcUGCGCCGcggguaguaGUCGCGGa -3'
miRNA:   3'- ccgCGCG-CCG---GC-ACGCGGC---------CAGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 32780 0.66 0.528687
Target:  5'- cGC-CGCGGCCGcgggGgGCCGaa-GCGGa -3'
miRNA:   3'- cCGcGCGCCGGCa---CgCGGCcagCGCC- -5'
29427 5' -65.4 NC_006151.1 + 33186 0.66 0.528687
Target:  5'- aGGUGUGgggggauggcCGGCCG-GCGCCcccGGagcaCGCGGg -3'
miRNA:   3'- -CCGCGC----------GCCGGCaCGCGG---CCa---GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 67985 0.66 0.528687
Target:  5'- cGCG-GCGGCC---CGCCGGcgcCGCGGc -3'
miRNA:   3'- cCGCgCGCCGGcacGCGGCCa--GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 70090 0.66 0.528687
Target:  5'- uGCGCGUGGgCG-GCGaaGGgCGCGa -3'
miRNA:   3'- cCGCGCGCCgGCaCGCggCCaGCGCc -5'
29427 5' -65.4 NC_006151.1 + 91082 0.66 0.528687
Target:  5'- aGGC-CGCGGgCGaGCGCgaaggucguccCGGcCGCGGc -3'
miRNA:   3'- -CCGcGCGCCgGCaCGCG-----------GCCaGCGCC- -5'
29427 5' -65.4 NC_006151.1 + 99342 0.66 0.528687
Target:  5'- aGCGCGCcgucGGCUGcaCGgCGGUCGuCGGc -3'
miRNA:   3'- cCGCGCG----CCGGCacGCgGCCAGC-GCC- -5'
29427 5' -65.4 NC_006151.1 + 121842 0.66 0.528687
Target:  5'- -uCGCGCGGCgGcUGcCGCUGGagGCGc -3'
miRNA:   3'- ccGCGCGCCGgC-AC-GCGGCCagCGCc -5'
29427 5' -65.4 NC_006151.1 + 97743 0.66 0.525946
Target:  5'- aGCGCGCGGUgcgggaacaCGUggcuccggaucaugGCGCgcagcaCGGUCGCGa -3'
miRNA:   3'- cCGCGCGCCG---------GCA--------------CGCG------GCCAGCGCc -5'
29427 5' -65.4 NC_006151.1 + 76753 0.66 0.519572
Target:  5'- cGCGCGCGGCagcaGgaagGCGagCGcGUCGCa- -3'
miRNA:   3'- cCGCGCGCCGg---Ca---CGCg-GC-CAGCGcc -5'
29427 5' -65.4 NC_006151.1 + 102572 0.66 0.519572
Target:  5'- uGCGCGCGcCCGcGCGCgCGaGUCccgcgagucgcaGCGGg -3'
miRNA:   3'- cCGCGCGCcGGCaCGCG-GC-CAG------------CGCC- -5'
29427 5' -65.4 NC_006151.1 + 111232 0.66 0.519572
Target:  5'- aGGCGcCGCaGCCccaggaggguGUGCagcagcgagGCCGGgaaccgCGCGGg -3'
miRNA:   3'- -CCGC-GCGcCGG----------CACG---------CGGCCa-----GCGCC- -5'
29427 5' -65.4 NC_006151.1 + 96680 0.66 0.519572
Target:  5'- cGGgGCagGCGGCgucgaggaaugCGUccGCGCCGGggGCGGc -3'
miRNA:   3'- -CCgCG--CGCCG-----------GCA--CGCGGCCagCGCC- -5'
29427 5' -65.4 NC_006151.1 + 61784 0.66 0.519572
Target:  5'- cGGCGCGaggcCGGCCGgcugGCGUuccagcccagcgUGGUgcucuaCGCGGc -3'
miRNA:   3'- -CCGCGC----GCCGGCa---CGCG------------GCCA------GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.