miRNA display CGI


Results 81 - 100 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 3' -64.9 NC_006151.1 + 139918 0.67 0.418563
Target:  5'- -cGCGCCGcGGGcucguCGCCGUGggcCGCCGu -3'
miRNA:   3'- cuCGCGGUaCCCc----GCGGCGCa--GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 38819 0.67 0.418563
Target:  5'- -cGCGCCcgacGGcGGCuuccGCCGCGUCccgGCCGg -3'
miRNA:   3'- cuCGCGGua--CC-CCG----CGGCGCAG---CGGC- -5'
29428 3' -64.9 NC_006151.1 + 122388 0.67 0.418563
Target:  5'- -cGCGCCGcGGGcGCGCgcuggcgGCGcUCGCCGc -3'
miRNA:   3'- cuCGCGGUaCCC-CGCGg------CGC-AGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 72728 0.67 0.410301
Target:  5'- cGGCcCCGaGGGGCGuCCGCagcagCGCCGa -3'
miRNA:   3'- cUCGcGGUaCCCCGC-GGCGca---GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 117198 0.67 0.410301
Target:  5'- gGGGCGUCGUaguaguagacGGGCGCgGCGUCGaCGa -3'
miRNA:   3'- -CUCGCGGUAc---------CCCGCGgCGCAGCgGC- -5'
29428 3' -64.9 NC_006151.1 + 69191 0.67 0.410301
Target:  5'- -cGCGCCA-GGGGCucgcuCCGgGgcccgCGCCGg -3'
miRNA:   3'- cuCGCGGUaCCCCGc----GGCgCa----GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 84732 0.67 0.409481
Target:  5'- aGGCGCuCGUGGugcucgaggagacGGCG-CGCGcCGCCGa -3'
miRNA:   3'- cUCGCG-GUACC-------------CCGCgGCGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 51392 0.68 0.402142
Target:  5'- -cGCGgCccGGGGCGagCGCGUCGCa- -3'
miRNA:   3'- cuCGCgGuaCCCCGCg-GCGCAGCGgc -5'
29428 3' -64.9 NC_006151.1 + 78394 0.68 0.402142
Target:  5'- gGGGCgGCCAcGGcGGCucucggGCCGCGagCGCCGu -3'
miRNA:   3'- -CUCG-CGGUaCC-CCG------CGGCGCa-GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 99671 0.68 0.402142
Target:  5'- cAGaGCCGcUGGGGC-CUGCG-CGCCGa -3'
miRNA:   3'- cUCgCGGU-ACCCCGcGGCGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 79660 0.68 0.402142
Target:  5'- gGAuCGUCGUGGGacCGCCGgauCGUCGCCGc -3'
miRNA:   3'- -CUcGCGGUACCCc-GCGGC---GCAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 69644 0.68 0.394086
Target:  5'- -cGCG-CGUGcGGCGCCGCcggGUCGUCGa -3'
miRNA:   3'- cuCGCgGUACcCCGCGGCG---CAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 86594 0.68 0.394086
Target:  5'- cGAGCuGC--UGGcGcGCGCCGCcgaGUCGCCGg -3'
miRNA:   3'- -CUCG-CGguACC-C-CGCGGCG---CAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 121933 0.68 0.394086
Target:  5'- -cGUGCUG-GGGGCGCUGgcCGcCGCCGg -3'
miRNA:   3'- cuCGCGGUaCCCCGCGGC--GCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 8319 0.68 0.394086
Target:  5'- cGAGC-CCccGGGGCGCgcgggccucgauCGCGccCGCCGg -3'
miRNA:   3'- -CUCGcGGuaCCCCGCG------------GCGCa-GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 67959 0.68 0.394086
Target:  5'- -cGCGCCG-GGGGCcaggaccacgcaGUCGCGgcggccCGCCGg -3'
miRNA:   3'- cuCGCGGUaCCCCG------------CGGCGCa-----GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 123075 0.68 0.394086
Target:  5'- cGAGCGCC--GGcGGCGCCuguacGCGgacCGCCu -3'
miRNA:   3'- -CUCGCGGuaCC-CCGCGG-----CGCa--GCGGc -5'
29428 3' -64.9 NC_006151.1 + 103548 0.68 0.393286
Target:  5'- uGGGCGCCGggcagccgcucGGGGCGCuggucaaCGCGcUCGCgGa -3'
miRNA:   3'- -CUCGCGGUa----------CCCCGCG-------GCGC-AGCGgC- -5'
29428 3' -64.9 NC_006151.1 + 115202 0.68 0.386135
Target:  5'- -cGCGCCGcGGGcGCGCgCGCGaUCgugGCCGc -3'
miRNA:   3'- cuCGCGGUaCCC-CGCG-GCGC-AG---CGGC- -5'
29428 3' -64.9 NC_006151.1 + 101288 0.68 0.381416
Target:  5'- aGGGCGCg--GGcGGCGCCGCGcugcacugcgucuucUCGCgGg -3'
miRNA:   3'- -CUCGCGguaCC-CCGCGGCGC---------------AGCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.