miRNA display CGI


Results 61 - 80 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 3' -64.9 NC_006151.1 + 73045 0.67 0.443942
Target:  5'- uGGCGCgGUgGGGGUGCgcggggucCGCGUgGCUGu -3'
miRNA:   3'- cUCGCGgUA-CCCCGCG--------GCGCAgCGGC- -5'
29428 3' -64.9 NC_006151.1 + 126035 0.67 0.443942
Target:  5'- cGGCGaCGU-GGGCGCCGCcGUCGgCa -3'
miRNA:   3'- cUCGCgGUAcCCCGCGGCG-CAGCgGc -5'
29428 3' -64.9 NC_006151.1 + 126411 0.67 0.443942
Target:  5'- -cGCGUC--GGGGCGauggccaCGCGcCGCCGg -3'
miRNA:   3'- cuCGCGGuaCCCCGCg------GCGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 128894 0.67 0.443942
Target:  5'- cAGCaGCaugacggugGGGGCGUCGCGcUCGUCGu -3'
miRNA:   3'- cUCG-CGgua------CCCCGCGGCGC-AGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 131866 0.67 0.443942
Target:  5'- -cGCGCC--GGcGGCGUCGgGUCGCa- -3'
miRNA:   3'- cuCGCGGuaCC-CCGCGGCgCAGCGgc -5'
29428 3' -64.9 NC_006151.1 + 29206 0.67 0.441365
Target:  5'- gGGGCGCgGcGGGGUggggaugggucaccGCCGgGUCgGCCGc -3'
miRNA:   3'- -CUCGCGgUaCCCCG--------------CGGCgCAG-CGGC- -5'
29428 3' -64.9 NC_006151.1 + 111443 0.67 0.435385
Target:  5'- cGGCGCgGUccaGGaGGCGCUGCGUCuGCg- -3'
miRNA:   3'- cUCGCGgUA---CC-CCGCGGCGCAG-CGgc -5'
29428 3' -64.9 NC_006151.1 + 71675 0.67 0.435385
Target:  5'- -cGCGCCAcGGGccGCGUgccgagCGUGUCGCCc -3'
miRNA:   3'- cuCGCGGUaCCC--CGCG------GCGCAGCGGc -5'
29428 3' -64.9 NC_006151.1 + 68285 0.67 0.435385
Target:  5'- cGGGCGCCAcGGcGGCcaGgCGCG-CGCCc -3'
miRNA:   3'- -CUCGCGGUaCC-CCG--CgGCGCaGCGGc -5'
29428 3' -64.9 NC_006151.1 + 39403 0.67 0.432837
Target:  5'- cGGCccgGCCGUGGGGgacuaccacgucuaCGuCCGCGUcCGCCu -3'
miRNA:   3'- cUCG---CGGUACCCC--------------GC-GGCGCA-GCGGc -5'
29428 3' -64.9 NC_006151.1 + 657 0.67 0.43199
Target:  5'- gGGGCGCgGccGGGGCGggcuCCGCGgaucgcaucggcgCGCCGa -3'
miRNA:   3'- -CUCGCGgUa-CCCCGC----GGCGCa------------GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 109538 0.67 0.43199
Target:  5'- cAGCGCCccccGGaGGCGCCGUGgacguggcccgaGCCGa -3'
miRNA:   3'- cUCGCGGua--CC-CCGCGGCGCag----------CGGC- -5'
29428 3' -64.9 NC_006151.1 + 86297 0.67 0.430298
Target:  5'- cGGCGUCGucaacugcccgcagcUGGGG-GCCGUGcUCGCCc -3'
miRNA:   3'- cUCGCGGU---------------ACCCCgCGGCGC-AGCGGc -5'
29428 3' -64.9 NC_006151.1 + 57973 0.67 0.426925
Target:  5'- uGAGC-CgGUGGGcggcgagcGCGCCGCGgacCGCCu -3'
miRNA:   3'- -CUCGcGgUACCC--------CGCGGCGCa--GCGGc -5'
29428 3' -64.9 NC_006151.1 + 64541 0.67 0.426925
Target:  5'- -cGCGUCG-GGGGCggcgagGCCGUGgcgCGCCa -3'
miRNA:   3'- cuCGCGGUaCCCCG------CGGCGCa--GCGGc -5'
29428 3' -64.9 NC_006151.1 + 81769 0.67 0.426925
Target:  5'- cGGGCGCCAccGGGacGCGCUcgGCG-CGCCc -3'
miRNA:   3'- -CUCGCGGUa-CCC--CGCGG--CGCaGCGGc -5'
29428 3' -64.9 NC_006151.1 + 105763 0.67 0.426925
Target:  5'- -cGCGCCu--GGGCGaCCGCGaCGUCa -3'
miRNA:   3'- cuCGCGGuacCCCGC-GGCGCaGCGGc -5'
29428 3' -64.9 NC_006151.1 + 106155 0.67 0.426925
Target:  5'- -cGCGCaccuucGGGGCGCuggacCGCGUCGCg- -3'
miRNA:   3'- cuCGCGgua---CCCCGCG-----GCGCAGCGgc -5'
29428 3' -64.9 NC_006151.1 + 113097 0.67 0.426925
Target:  5'- -cGcCGCCAccgGGGGCgggGCCGCGgacgcggaCGCCGc -3'
miRNA:   3'- cuC-GCGGUa--CCCCG---CGGCGCa-------GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 39965 0.67 0.426085
Target:  5'- cGGGCGCCGUcgccgccGcGGGCGCCcCGcCgGCCGu -3'
miRNA:   3'- -CUCGCGGUA-------C-CCCGCGGcGCaG-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.