miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 3' -64.9 NC_006151.1 + 85638 0.66 0.470163
Target:  5'- cGGCGCCAgcgGGGacGCGcCCGCcUCGCg- -3'
miRNA:   3'- cUCGCGGUa--CCC--CGC-GGCGcAGCGgc -5'
29428 3' -64.9 NC_006151.1 + 96863 0.66 0.470163
Target:  5'- -cGCGCCcgccGGGCGCgGCG-CGCgCGg -3'
miRNA:   3'- cuCGCGGuac-CCCGCGgCGCaGCG-GC- -5'
29428 3' -64.9 NC_006151.1 + 104553 0.66 0.470163
Target:  5'- cGAGCugGCCGcccUGGGcGCGCgGCG-CGCgGa -3'
miRNA:   3'- -CUCG--CGGU---ACCC-CGCGgCGCaGCGgC- -5'
29428 3' -64.9 NC_006151.1 + 105266 0.66 0.470163
Target:  5'- cGAG-GCCugggaggacuuUGGGcGCGCgCGCGgccgCGCCGg -3'
miRNA:   3'- -CUCgCGGu----------ACCC-CGCG-GCGCa---GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 54652 0.66 0.469276
Target:  5'- cGAGCGCUgcGUGGacgagcacgaccuGGCcggGCaccugCGCGUCGCCGg -3'
miRNA:   3'- -CUCGCGG--UACC-------------CCG---CG-----GCGCAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 66860 0.67 0.461333
Target:  5'- aGAGgGCC--GGGGCGgCGCGaagggcgCGCCc -3'
miRNA:   3'- -CUCgCGGuaCCCCGCgGCGCa------GCGGc -5'
29428 3' -64.9 NC_006151.1 + 113315 0.67 0.461333
Target:  5'- uGGaCGCCAcgcUGGGGC-CCGUGcuggCGCUGg -3'
miRNA:   3'- cUC-GCGGU---ACCCCGcGGCGCa---GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 3099 0.67 0.461333
Target:  5'- cAGCGCCGaGaGGcCGCCGCGgCGCgGg -3'
miRNA:   3'- cUCGCGGUaCcCC-GCGGCGCaGCGgC- -5'
29428 3' -64.9 NC_006151.1 + 28095 0.67 0.461333
Target:  5'- cGGGCGuCCucgagcGGGGCGCgGCuccUCGUCGg -3'
miRNA:   3'- -CUCGC-GGua----CCCCGCGgCGc--AGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 44167 0.67 0.461333
Target:  5'- -cGUGCCccUGGGaGCaCCGCGggUCGCCGu -3'
miRNA:   3'- cuCGCGGu-ACCC-CGcGGCGC--AGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 68872 0.67 0.461333
Target:  5'- cAGCGCCG-GGGcGCGCC-CGgccaCGUCGa -3'
miRNA:   3'- cUCGCGGUaCCC-CGCGGcGCa---GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 128229 0.67 0.461333
Target:  5'- cGAGC-UCGU-GGGCGCCaG-GUCGCCGa -3'
miRNA:   3'- -CUCGcGGUAcCCCGCGG-CgCAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 105686 0.67 0.460455
Target:  5'- cGGCGgCGcGGGGCcgacgccggcgcgGCCGCG-CGCCu -3'
miRNA:   3'- cUCGCgGUaCCCCG-------------CGGCGCaGCGGc -5'
29428 3' -64.9 NC_006151.1 + 64013 0.67 0.452592
Target:  5'- cGGCGCCA---GGCGCCcgaucGCGUCGCg- -3'
miRNA:   3'- cUCGCGGUaccCCGCGG-----CGCAGCGgc -5'
29428 3' -64.9 NC_006151.1 + 100364 0.67 0.452592
Target:  5'- uGGaCGCCGU-GGGCGCCuucCG-CGCCGa -3'
miRNA:   3'- cUC-GCGGUAcCCCGCGGc--GCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 128964 0.67 0.452592
Target:  5'- uAGCGCCAguaGGuGGCcagcaCCGCG-CGCCa -3'
miRNA:   3'- cUCGCGGUa--CC-CCGc----GGCGCaGCGGc -5'
29428 3' -64.9 NC_006151.1 + 18428 0.67 0.452592
Target:  5'- gGAGgGCCGccgGcGGGCGUCGCccgccuccucGUCGUCGu -3'
miRNA:   3'- -CUCgCGGUa--C-CCCGCGGCG----------CAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 105456 0.67 0.451723
Target:  5'- -cGCGCCGgggcccuGGGCGacuucuuCCGCGaCGCCGg -3'
miRNA:   3'- cuCGCGGUac-----CCCGC-------GGCGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 106388 0.67 0.449121
Target:  5'- cGGCGCCcgcugcgcgacgGGcaGGCGCuguucacgcugCGCGUCGCCGa -3'
miRNA:   3'- cUCGCGGua----------CC--CCGCG-----------GCGCAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 128894 0.67 0.443942
Target:  5'- cAGCaGCaugacggugGGGGCGUCGCGcUCGUCGu -3'
miRNA:   3'- cUCG-CGgua------CCCCGCGGCGC-AGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.