miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 3' -64.9 NC_006151.1 + 88148 0.66 0.49715
Target:  5'- uGAGCagGCCG-GGGuGCuCCGCGcaggCGCCGa -3'
miRNA:   3'- -CUCG--CGGUaCCC-CGcGGCGCa---GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 39316 0.66 0.500801
Target:  5'- cGGCGCCGUGGaguaccucugcucgcGGCucggcGCgGCGcggCGCCGg -3'
miRNA:   3'- cUCGCGGUACC---------------CCG-----CGgCGCa--GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 58099 0.66 0.500801
Target:  5'- cGGGCcCCAggaaggcgaagacgGGcGGgGUCGCGUCGCCc -3'
miRNA:   3'- -CUCGcGGUa-------------CC-CCgCGGCGCAGCGGc -5'
29428 3' -64.9 NC_006151.1 + 11089 0.66 0.504465
Target:  5'- -cGUGCCAaguuuaGGGCGCUGCGacccagagagagCGCCGa -3'
miRNA:   3'- cuCGCGGUac----CCCGCGGCGCa-----------GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 30914 0.66 0.506301
Target:  5'- uAGCGCCcgcGGGCGgcCCGCGcggaUCGCCc -3'
miRNA:   3'- cUCGCGGuacCCCGC--GGCGC----AGCGGc -5'
29428 3' -64.9 NC_006151.1 + 128964 0.67 0.452592
Target:  5'- uAGCGCCAguaGGuGGCcagcaCCGCG-CGCCa -3'
miRNA:   3'- cUCGCGGUa--CC-CCGc----GGCGCaGCGGc -5'
29428 3' -64.9 NC_006151.1 + 100364 0.67 0.452592
Target:  5'- uGGaCGCCGU-GGGCGCCuucCG-CGCCGa -3'
miRNA:   3'- cUC-GCGGUAcCCCGCGGc--GCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 64013 0.67 0.452592
Target:  5'- cGGCGCCA---GGCGCCcgaucGCGUCGCg- -3'
miRNA:   3'- cUCGCGGUaccCCGCGG-----CGCAGCGgc -5'
29428 3' -64.9 NC_006151.1 + 105456 0.67 0.451723
Target:  5'- -cGCGCCGgggcccuGGGCGacuucuuCCGCGaCGCCGg -3'
miRNA:   3'- cuCGCGGUac-----CCCGC-------GGCGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 106388 0.67 0.449121
Target:  5'- cGGCGCCcgcugcgcgacgGGcaGGCGCuguucacgcugCGCGUCGCCGa -3'
miRNA:   3'- cUCGCGGua----------CC--CCGCG-----------GCGCAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 131866 0.67 0.443942
Target:  5'- -cGCGCC--GGcGGCGUCGgGUCGCa- -3'
miRNA:   3'- cuCGCGGuaCC-CCGCGGCgCAGCGgc -5'
29428 3' -64.9 NC_006151.1 + 18428 0.67 0.452592
Target:  5'- gGAGgGCCGccgGcGGGCGUCGCccgccuccucGUCGUCGu -3'
miRNA:   3'- -CUCgCGGUa--C-CCCGCGGCG----------CAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 105686 0.67 0.460455
Target:  5'- cGGCGgCGcGGGGCcgacgccggcgcgGCCGCG-CGCCu -3'
miRNA:   3'- cUCGCgGUaCCCCG-------------CGGCGCaGCGGc -5'
29428 3' -64.9 NC_006151.1 + 66860 0.67 0.461333
Target:  5'- aGAGgGCC--GGGGCGgCGCGaagggcgCGCCc -3'
miRNA:   3'- -CUCgCGGuaCCCCGCgGCGCa------GCGGc -5'
29428 3' -64.9 NC_006151.1 + 113315 0.67 0.461333
Target:  5'- uGGaCGCCAcgcUGGGGC-CCGUGcuggCGCUGg -3'
miRNA:   3'- cUC-GCGGU---ACCCCGcGGCGCa---GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 3099 0.67 0.461333
Target:  5'- cAGCGCCGaGaGGcCGCCGCGgCGCgGg -3'
miRNA:   3'- cUCGCGGUaCcCC-GCGGCGCaGCGgC- -5'
29428 3' -64.9 NC_006151.1 + 28095 0.67 0.461333
Target:  5'- cGGGCGuCCucgagcGGGGCGCgGCuccUCGUCGg -3'
miRNA:   3'- -CUCGC-GGua----CCCCGCGgCGc--AGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 44167 0.67 0.461333
Target:  5'- -cGUGCCccUGGGaGCaCCGCGggUCGCCGu -3'
miRNA:   3'- cuCGCGGu-ACCC-CGcGGCGC--AGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 68872 0.67 0.461333
Target:  5'- cAGCGCCG-GGGcGCGCC-CGgccaCGUCGa -3'
miRNA:   3'- cUCGCGGUaCCC-CGCGGcGCa---GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 128894 0.67 0.443942
Target:  5'- cAGCaGCaugacggugGGGGCGUCGCGcUCGUCGu -3'
miRNA:   3'- cUCG-CGgua------CCCCGCGGCGC-AGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.