miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 3' -64.9 NC_006151.1 + 31758 0.66 0.506301
Target:  5'- -cGCGCCugcGGcGGCgGgCGCG-CGCCGg -3'
miRNA:   3'- cuCGCGGua-CC-CCG-CgGCGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 135163 0.66 0.506301
Target:  5'- cGGGCgcgGCCcgGacGGGCGCCGgcugcCGcCGCCGg -3'
miRNA:   3'- -CUCG---CGGuaC--CCCGCGGC-----GCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 68088 0.66 0.515522
Target:  5'- cAGCGCCucgaGGC-UCGCGUCGCCc -3'
miRNA:   3'- cUCGCGGuaccCCGcGGCGCAGCGGc -5'
29428 3' -64.9 NC_006151.1 + 77478 0.66 0.515522
Target:  5'- -cGCGCCc--GGGaaCCGCGUCGUCGc -3'
miRNA:   3'- cuCGCGGuacCCCgcGGCGCAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 103817 0.66 0.515522
Target:  5'- cGGCgGCCGUGGcGGCgGCCGUGgagaUGCuCGg -3'
miRNA:   3'- cUCG-CGGUACC-CCG-CGGCGCa---GCG-GC- -5'
29428 3' -64.9 NC_006151.1 + 58099 0.66 0.500801
Target:  5'- cGGGCcCCAggaaggcgaagacgGGcGGgGUCGCGUCGCCc -3'
miRNA:   3'- -CUCGcGGUa-------------CC-CCgCGGCGCAGCGGc -5'
29428 3' -64.9 NC_006151.1 + 39316 0.66 0.500801
Target:  5'- cGGCGCCGUGGaguaccucugcucgcGGCucggcGCgGCGcggCGCCGg -3'
miRNA:   3'- cUCGCGGUACC---------------CCG-----CGgCGCa--GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 97625 0.66 0.485367
Target:  5'- cGAGCGgCGcgcggccaugucguUGGuGcGCGCCGCcuccugGUCGCCGc -3'
miRNA:   3'- -CUCGCgGU--------------ACC-C-CGCGGCG------CAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 2223 0.66 0.488074
Target:  5'- cGGCGCCcccGGcGGCGgCGCGgaCGCUGg -3'
miRNA:   3'- cUCGCGGua-CC-CCGCgGCGCa-GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 45203 0.66 0.488074
Target:  5'- cGGCGaCG-GGGuGCGCCGCGcUCGCg- -3'
miRNA:   3'- cUCGCgGUaCCC-CGCGGCGC-AGCGgc -5'
29428 3' -64.9 NC_006151.1 + 53977 0.66 0.488074
Target:  5'- cGGCGCCuccGcGGGCGUCGCGgcgaGCUc -3'
miRNA:   3'- cUCGCGGua-C-CCCGCGGCGCag--CGGc -5'
29428 3' -64.9 NC_006151.1 + 103786 0.66 0.488074
Target:  5'- gGAGCGC--UGGcGGCGCUGCaGgccgCGCUGu -3'
miRNA:   3'- -CUCGCGguACC-CCGCGGCG-Ca---GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 37882 0.66 0.488074
Target:  5'- -cGCGCCggGGaGGCGaCCGuCGagGCCc -3'
miRNA:   3'- cuCGCGGuaCC-CCGC-GGC-GCagCGGc -5'
29428 3' -64.9 NC_006151.1 + 82617 0.66 0.488074
Target:  5'- -cGCGCgc--GGGCGCCGCGgugggCGCgGg -3'
miRNA:   3'- cuCGCGguacCCCGCGGCGCa----GCGgC- -5'
29428 3' -64.9 NC_006151.1 + 74855 0.66 0.494419
Target:  5'- uGGCGUCGcGGaaGGCGCCGCGcaccgcggccaccgUgGCCGg -3'
miRNA:   3'- cUCGCGGUaCC--CCGCGGCGC--------------AgCGGC- -5'
29428 3' -64.9 NC_006151.1 + 102377 0.66 0.496239
Target:  5'- -cGCGcCCGUGGccaagcuGGCGCuggucgcggcgCGCGUCGCgCGg -3'
miRNA:   3'- cuCGC-GGUACC-------CCGCG-----------GCGCAGCG-GC- -5'
29428 3' -64.9 NC_006151.1 + 5366 0.66 0.49715
Target:  5'- cGGCGCCGgcGGGGCugucuCUGCGggggCGCCc -3'
miRNA:   3'- cUCGCGGUa-CCCCGc----GGCGCa---GCGGc -5'
29428 3' -64.9 NC_006151.1 + 92677 0.66 0.49715
Target:  5'- cGGCGgCcgGGGacgcgcgcuCGCCGCG-CGCCGa -3'
miRNA:   3'- cUCGCgGuaCCCc--------GCGGCGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 31342 0.66 0.49715
Target:  5'- cGGCGCCGUGGGccCGaCCcCGguccgCGCCGg -3'
miRNA:   3'- cUCGCGGUACCCc-GC-GGcGCa----GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 88148 0.66 0.49715
Target:  5'- uGAGCagGCCG-GGGuGCuCCGCGcaggCGCCGa -3'
miRNA:   3'- -CUCG--CGGUaCCC-CGcGGCGCa---GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.