miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 3' -64.9 NC_006151.1 + 29049 0.69 0.326447
Target:  5'- -cGUGCCAagacucgaguUGGcGGCGCCGCGg-GCCc -3'
miRNA:   3'- cuCGCGGU----------ACC-CCGCGGCGCagCGGc -5'
29428 3' -64.9 NC_006151.1 + 29206 0.67 0.441365
Target:  5'- gGGGCGCgGcGGGGUggggaugggucaccGCCGgGUCgGCCGc -3'
miRNA:   3'- -CUCGCGgUaCCCCG--------------CGGCgCAG-CGGC- -5'
29428 3' -64.9 NC_006151.1 + 30914 0.66 0.506301
Target:  5'- uAGCGCCcgcGGGCGgcCCGCGcggaUCGCCc -3'
miRNA:   3'- cUCGCGGuacCCCGC--GGCGC----AGCGGc -5'
29428 3' -64.9 NC_006151.1 + 31342 0.66 0.49715
Target:  5'- cGGCGCCGUGGGccCGaCCcCGguccgCGCCGg -3'
miRNA:   3'- cUCGCGGUACCCc-GC-GGcGCa----GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 31704 0.7 0.292113
Target:  5'- -cGCGCCAUuGGGCGCCgggcggaacgggGCGUggagaggcgcccgCGCCGg -3'
miRNA:   3'- cuCGCGGUAcCCCGCGG------------CGCA-------------GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 31758 0.66 0.506301
Target:  5'- -cGCGCCugcGGcGGCgGgCGCG-CGCCGg -3'
miRNA:   3'- cuCGCGGua-CC-CCG-CgGCGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 34625 0.72 0.228319
Target:  5'- aGGCGCgGgUGGGGCGaCCGCGggggUCGCgGg -3'
miRNA:   3'- cUCGCGgU-ACCCCGC-GGCGC----AGCGgC- -5'
29428 3' -64.9 NC_006151.1 + 37882 0.66 0.488074
Target:  5'- -cGCGCCggGGaGGCGaCCGuCGagGCCc -3'
miRNA:   3'- cuCGCGGuaCC-CCGC-GGC-GCagCGGc -5'
29428 3' -64.9 NC_006151.1 + 38819 0.67 0.418563
Target:  5'- -cGCGCCcgacGGcGGCuuccGCCGCGUCccgGCCGg -3'
miRNA:   3'- cuCGCGGua--CC-CCG----CGGCGCAG---CGGC- -5'
29428 3' -64.9 NC_006151.1 + 39156 0.69 0.35541
Target:  5'- -cGCGCCGcGGcggccucucGGCGCUGC-UCGCCGc -3'
miRNA:   3'- cuCGCGGUaCC---------CCGCGGCGcAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 39316 0.66 0.500801
Target:  5'- cGGCGCCGUGGaguaccucugcucgcGGCucggcGCgGCGcggCGCCGg -3'
miRNA:   3'- cUCGCGGUACC---------------CCG-----CGgCGCa--GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 39403 0.67 0.432837
Target:  5'- cGGCccgGCCGUGGGGgacuaccacgucuaCGuCCGCGUcCGCCu -3'
miRNA:   3'- cUCG---CGGUACCCC--------------GC-GGCGCA-GCGGc -5'
29428 3' -64.9 NC_006151.1 + 39464 0.69 0.340706
Target:  5'- -uGCGCCGUGcgcuggcccGGGUGCCGCGagcucCGCgCGg -3'
miRNA:   3'- cuCGCGGUAC---------CCCGCGGCGCa----GCG-GC- -5'
29428 3' -64.9 NC_006151.1 + 39965 0.67 0.426085
Target:  5'- cGGGCGCCGUcgccgccGcGGGCGCCcCGcCgGCCGu -3'
miRNA:   3'- -CUCGCGGUA-------C-CCCGCGGcGCaG-CGGC- -5'
29428 3' -64.9 NC_006151.1 + 40049 0.71 0.244606
Target:  5'- gGGGCGCCGUGGagacccaccGGC-CCGCGggggccucgggCGCCGg -3'
miRNA:   3'- -CUCGCGGUACC---------CCGcGGCGCa----------GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 44167 0.67 0.461333
Target:  5'- -cGUGCCccUGGGaGCaCCGCGggUCGCCGu -3'
miRNA:   3'- cuCGCGGu-ACCC-CGcGGCGC--AGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 44810 0.68 0.378291
Target:  5'- gGGGUGCUAUgGGGGUGCgaggGCGUCGggaCCGg -3'
miRNA:   3'- -CUCGCGGUA-CCCCGCGg---CGCAGC---GGC- -5'
29428 3' -64.9 NC_006151.1 + 45203 0.66 0.488074
Target:  5'- cGGCGaCG-GGGuGCGCCGCGcUCGCg- -3'
miRNA:   3'- cUCGCgGUaCCC-CGCGGCGC-AGCGgc -5'
29428 3' -64.9 NC_006151.1 + 47694 0.71 0.26781
Target:  5'- cAGCGCCAuuUGGccGGUGCgGCGUC-CCGg -3'
miRNA:   3'- cUCGCGGU--ACC--CCGCGgCGCAGcGGC- -5'
29428 3' -64.9 NC_006151.1 + 48585 0.66 0.506301
Target:  5'- -uGcCGCCcgGGGuGCGCCuCGUCGUg- -3'
miRNA:   3'- cuC-GCGGuaCCC-CGCGGcGCAGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.