miRNA display CGI


Results 21 - 40 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 3' -64.9 NC_006151.1 + 11089 0.66 0.504465
Target:  5'- -cGUGCCAaguuuaGGGCGCUGCGacccagagagagCGCCGa -3'
miRNA:   3'- cuCGCGGUac----CCCGCGGCGCa-----------GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 11993 0.66 0.479077
Target:  5'- -cGCGCCGcugucUGuGGCGCC-CGUCGUCu -3'
miRNA:   3'- cuCGCGGU-----ACcCCGCGGcGCAGCGGc -5'
29428 3' -64.9 NC_006151.1 + 13184 0.7 0.299272
Target:  5'- -cGCgGCCGUcucGGGGC-CCGCGgCGCCGc -3'
miRNA:   3'- cuCG-CGGUA---CCCCGcGGCGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 17098 0.68 0.378291
Target:  5'- -cGCGCCcgucGGGGCGCCGgGggCuCCGg -3'
miRNA:   3'- cuCGCGGua--CCCCGCGGCgCa-GcGGC- -5'
29428 3' -64.9 NC_006151.1 + 17311 0.79 0.072322
Target:  5'- cGAGCcguccGCCggGGGGCGCCGCGUCaGCuCGu -3'
miRNA:   3'- -CUCG-----CGGuaCCCCGCGGCGCAG-CG-GC- -5'
29428 3' -64.9 NC_006151.1 + 17368 0.74 0.160146
Target:  5'- cGGCGCCGUGGGGUcgGaCCGUGUcCGCaCGa -3'
miRNA:   3'- cUCGCGGUACCCCG--C-GGCGCA-GCG-GC- -5'
29428 3' -64.9 NC_006151.1 + 18316 0.68 0.362171
Target:  5'- gGGGCGCCuccucGGGGCGCaCGUacagcccGUCGUCc -3'
miRNA:   3'- -CUCGCGGua---CCCCGCG-GCG-------CAGCGGc -5'
29428 3' -64.9 NC_006151.1 + 18428 0.67 0.452592
Target:  5'- gGAGgGCCGccgGcGGGCGUCGCccgccuccucGUCGUCGu -3'
miRNA:   3'- -CUCgCGGUa--C-CCCGCGGCG----------CAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 18692 0.7 0.280063
Target:  5'- cGGGCGCgCG-GGcGGCGCCGgCGUCGUg- -3'
miRNA:   3'- -CUCGCG-GUaCC-CCGCGGC-GCAGCGgc -5'
29428 3' -64.9 NC_006151.1 + 20140 0.82 0.044472
Target:  5'- cGGGCGCCGcgGGGGCGgCGCGUggacCGCCGg -3'
miRNA:   3'- -CUCGCGGUa-CCCCGCgGCGCA----GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 20466 0.71 0.255992
Target:  5'- uGGCGCCGgucccccgggGGGGCGCgGgGgUCGUCGg -3'
miRNA:   3'- cUCGCGGUa---------CCCCGCGgCgC-AGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 21441 0.71 0.235803
Target:  5'- -cGCGgCGUGGGGUggcccccggcggcguGgucCCGCGUCGCCGg -3'
miRNA:   3'- cuCGCgGUACCCCG---------------C---GGCGCAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 21492 0.71 0.26781
Target:  5'- aGGCgGCCggGGGGCGCgGgCGUCaCCGg -3'
miRNA:   3'- cUCG-CGGuaCCCCGCGgC-GCAGcGGC- -5'
29428 3' -64.9 NC_006151.1 + 22317 0.69 0.319486
Target:  5'- cGAGCGUCGUccGGGCGaCCaGCGcCGCCa -3'
miRNA:   3'- -CUCGCGGUAc-CCCGC-GG-CGCaGCGGc -5'
29428 3' -64.9 NC_006151.1 + 24969 0.66 0.506301
Target:  5'- -cGCGCCGcGGccUGCCGCGUCaGCCc -3'
miRNA:   3'- cuCGCGGUaCCccGCGGCGCAG-CGGc -5'
29428 3' -64.9 NC_006151.1 + 27035 0.69 0.333521
Target:  5'- aGGGgGCCGaGGGGCGCuggCGCGUguaGCCc -3'
miRNA:   3'- -CUCgCGGUaCCCCGCG---GCGCAg--CGGc -5'
29428 3' -64.9 NC_006151.1 + 27085 0.72 0.212959
Target:  5'- aGGGCGCgGcgcaGGGCGCgCGUGUCGCCc -3'
miRNA:   3'- -CUCGCGgUac--CCCGCG-GCGCAGCGGc -5'
29428 3' -64.9 NC_006151.1 + 27186 0.77 0.090785
Target:  5'- gGGGCGCCA-GGGG-GCCGCGcagaaggCGCCGg -3'
miRNA:   3'- -CUCGCGGUaCCCCgCGGCGCa------GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 28095 0.67 0.461333
Target:  5'- cGGGCGuCCucgagcGGGGCGCgGCuccUCGUCGg -3'
miRNA:   3'- -CUCGC-GGua----CCCCGCGgCGc--AGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 28169 0.69 0.326447
Target:  5'- cGGCGUCGuUGGGGCGgCGagugcCGUCgGCCGg -3'
miRNA:   3'- cUCGCGGU-ACCCCGCgGC-----GCAG-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.