miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 3' -64.9 NC_006151.1 + 657 0.67 0.43199
Target:  5'- gGGGCGCgGccGGGGCGggcuCCGCGgaucgcaucggcgCGCCGa -3'
miRNA:   3'- -CUCGCGgUa-CCCCGC----GGCGCa------------GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 1817 0.66 0.470163
Target:  5'- aGGCGCCggGGaGGCaa-GCGcCGCCGg -3'
miRNA:   3'- cUCGCGGuaCC-CCGcggCGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 2106 0.71 0.255992
Target:  5'- cGAGCggGCCGcGGGGCcgGCCGuCGcCGCCGc -3'
miRNA:   3'- -CUCG--CGGUaCCCCG--CGGC-GCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 2223 0.66 0.488074
Target:  5'- cGGCGCCcccGGcGGCGgCGCGgaCGCUGg -3'
miRNA:   3'- cUCGCGGua-CC-CCGCgGCGCa-GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 2274 0.68 0.370555
Target:  5'- aGAGCacgGCCGgcGGGGCGCCcGCGgCGgCGa -3'
miRNA:   3'- -CUCG---CGGUa-CCCCGCGG-CGCaGCgGC- -5'
29428 3' -64.9 NC_006151.1 + 3099 0.67 0.461333
Target:  5'- cAGCGCCGaGaGGcCGCCGCGgCGCgGg -3'
miRNA:   3'- cUCGCGGUaCcCC-GCGGCGCaGCGgC- -5'
29428 3' -64.9 NC_006151.1 + 3250 0.74 0.160146
Target:  5'- cGGCGgCGgagcGGGGCGCCGCGgCGCgCGg -3'
miRNA:   3'- cUCGCgGUa---CCCCGCGGCGCaGCG-GC- -5'
29428 3' -64.9 NC_006151.1 + 3286 0.66 0.506301
Target:  5'- -uGCGCCA--GGGCgGCCGgGUCGaaGg -3'
miRNA:   3'- cuCGCGGUacCCCG-CGGCgCAGCggC- -5'
29428 3' -64.9 NC_006151.1 + 3716 0.7 0.305898
Target:  5'- -uGCGCCGcucGGGCGCUGgGUCcggGCCGg -3'
miRNA:   3'- cuCGCGGUac-CCCGCGGCgCAG---CGGC- -5'
29428 3' -64.9 NC_006151.1 + 3860 0.73 0.176291
Target:  5'- gGAG-GCCGgagGGGGCGCC-CGcCGCCGc -3'
miRNA:   3'- -CUCgCGGUa--CCCCGCGGcGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 4601 0.71 0.261847
Target:  5'- gGAGCcgugGCCGUGGGGCGC-GUGgacccggCGCUGg -3'
miRNA:   3'- -CUCG----CGGUACCCCGCGgCGCa------GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 5077 0.75 0.131806
Target:  5'- cGAGgGCCGcGGGGcCGCgGCGggCGCCGg -3'
miRNA:   3'- -CUCgCGGUaCCCC-GCGgCGCa-GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 5129 0.68 0.378291
Target:  5'- cGGGCGa-GUGGGGCGCCGg---GCCGg -3'
miRNA:   3'- -CUCGCggUACCCCGCGGCgcagCGGC- -5'
29428 3' -64.9 NC_006151.1 + 5366 0.66 0.49715
Target:  5'- cGGCGCCGgcGGGGCugucuCUGCGggggCGCCc -3'
miRNA:   3'- cUCGCGGUa-CCCCGc----GGCGCa---GCGGc -5'
29428 3' -64.9 NC_006151.1 + 5616 0.72 0.223098
Target:  5'- cGGCGgag-GGGGCGCCGCcGcCGCCGg -3'
miRNA:   3'- cUCGCgguaCCCCGCGGCG-CaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 5731 0.74 0.148925
Target:  5'- uGGCGCC--GGGGUccgagGCCGCGcCGCCGg -3'
miRNA:   3'- cUCGCGGuaCCCCG-----CGGCGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 5866 0.7 0.280063
Target:  5'- cGAGCGCCcgGGGcCGCCGgGg-GCCc -3'
miRNA:   3'- -CUCGCGGuaCCCcGCGGCgCagCGGc -5'
29428 3' -64.9 NC_006151.1 + 8286 0.71 0.244606
Target:  5'- aGAGUGUCcccgcGcGGGCGCCGCGUC-CCGc -3'
miRNA:   3'- -CUCGCGGua---C-CCCGCGGCGCAGcGGC- -5'
29428 3' -64.9 NC_006151.1 + 8319 0.68 0.394086
Target:  5'- cGAGC-CCccGGGGCGCgcgggccucgauCGCGccCGCCGg -3'
miRNA:   3'- -CUCGcGGuaCCCCGCG------------GCGCa-GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 9045 0.66 0.475501
Target:  5'- gGGGCGCCccgcgugcuccgGGGGCGCCG-GcCgGCCa -3'
miRNA:   3'- -CUCGCGGua----------CCCCGCGGCgCaG-CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.