miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 3' -64.9 NC_006151.1 + 96194 1.07 0.000587
Target:  5'- cGAGCGCCAUGGGGCGCCGCGUCGCCGu -3'
miRNA:   3'- -CUCGCGGUACCCCGCGGCGCAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 20140 0.82 0.044472
Target:  5'- cGGGCGCCGcgGGGGCGgCGCGUggacCGCCGg -3'
miRNA:   3'- -CUCGCGGUa-CCCCGCgGCGCA----GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 63924 0.81 0.050577
Target:  5'- -cGCGCCGUGGGGC-UCGCGUCGuCCGc -3'
miRNA:   3'- cuCGCGGUACCCCGcGGCGCAGC-GGC- -5'
29428 3' -64.9 NC_006151.1 + 127856 0.8 0.060512
Target:  5'- -uGCGCCGgagGGGGCGCCGCc-CGCCGc -3'
miRNA:   3'- cuCGCGGUa--CCCCGCGGCGcaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 17311 0.79 0.072322
Target:  5'- cGAGCcguccGCCggGGGGCGCCGCGUCaGCuCGu -3'
miRNA:   3'- -CUCG-----CGGuaCCCCGCGGCGCAG-CG-GC- -5'
29428 3' -64.9 NC_006151.1 + 27186 0.77 0.090785
Target:  5'- gGGGCGCCA-GGGG-GCCGCGcagaaggCGCCGg -3'
miRNA:   3'- -CUCGCGGUaCCCCgCGGCGCa------GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 119037 0.77 0.095458
Target:  5'- cGGGCGCCAaggacGGcGGCGCCGCGgcCGCCu -3'
miRNA:   3'- -CUCGCGGUa----CC-CCGCGGCGCa-GCGGc -5'
29428 3' -64.9 NC_006151.1 + 95843 0.77 0.102897
Target:  5'- -cGC-CCGUGGGGCGCuCGCuGUCGCUGu -3'
miRNA:   3'- cuCGcGGUACCCCGCG-GCG-CAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 59358 0.76 0.113665
Target:  5'- -cGCGCgCAcGGGGCGCCGCG-CgGCCGu -3'
miRNA:   3'- cuCGCG-GUaCCCCGCGGCGCaG-CGGC- -5'
29428 3' -64.9 NC_006151.1 + 89257 0.76 0.122424
Target:  5'- cGAGCGCCGucgUGGucgacGGCGCCGCGgcgauggcCGCCGc -3'
miRNA:   3'- -CUCGCGGU---ACC-----CCGCGGCGCa-------GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 69461 0.75 0.128607
Target:  5'- -cGCGCCGc-GGGCGCCGgcacCGUCGCCGc -3'
miRNA:   3'- cuCGCGGUacCCCGCGGC----GCAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 118938 0.75 0.129878
Target:  5'- uGAGCGCCGacgcggcgcugucgcUGGaGGCGCU-CGUCGCCGc -3'
miRNA:   3'- -CUCGCGGU---------------ACC-CCGCGGcGCAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 5077 0.75 0.131806
Target:  5'- cGAGgGCCGcGGGGcCGCgGCGggCGCCGg -3'
miRNA:   3'- -CUCgCGGUaCCCC-GCGgCGCa-GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 66532 0.75 0.131806
Target:  5'- -cGCGCCGcgcucuucgGGGGCGCgCGCGgccgCGCCGc -3'
miRNA:   3'- cuCGCGGUa--------CCCCGCG-GCGCa---GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 79611 0.75 0.131806
Target:  5'- cGGCGCCAcaacccGGaGCGCCGcCGUCGCCGc -3'
miRNA:   3'- cUCGCGGUac----CC-CGCGGC-GCAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 137396 0.75 0.131806
Target:  5'- aGAGCGCCugcccgccggGGGGCGCCcuCGcCGCCGc -3'
miRNA:   3'- -CUCGCGGua--------CCCCGCGGc-GCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 142311 0.75 0.131806
Target:  5'- cGAGCGCCGUaugGGGGC-CCGCG-CGCUc -3'
miRNA:   3'- -CUCGCGGUA---CCCCGcGGCGCaGCGGc -5'
29428 3' -64.9 NC_006151.1 + 131556 0.75 0.135078
Target:  5'- cGGGCGCCGcacGGGCcCCGCGUCGCUc -3'
miRNA:   3'- -CUCGCGGUac-CCCGcGGCGCAGCGGc -5'
29428 3' -64.9 NC_006151.1 + 139640 0.75 0.138424
Target:  5'- cGGCGCCGgcgcgGGGGuCGCgGCGggcgCGCCGc -3'
miRNA:   3'- cUCGCGGUa----CCCC-GCGgCGCa---GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 103680 0.75 0.141847
Target:  5'- -cGCGCgCGgcgGGGGUGCUGCG-CGCCGc -3'
miRNA:   3'- cuCGCG-GUa--CCCCGCGGCGCaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.