miRNA display CGI


Results 21 - 40 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 3' -64.9 NC_006151.1 + 5731 0.74 0.148925
Target:  5'- uGGCGCC--GGGGUccgagGCCGCGcCGCCGg -3'
miRNA:   3'- cUCGCGGuaCCCCG-----CGGCGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 93549 0.74 0.152583
Target:  5'- cAGCGCCAUGGGaaagucCGCCGCGggggcgggcgCGCCa -3'
miRNA:   3'- cUCGCGGUACCCc-----GCGGCGCa---------GCGGc -5'
29428 3' -64.9 NC_006151.1 + 78721 0.74 0.152583
Target:  5'- cGGCGcCCGUGGGGCGCgCGCugcggcccacGUCcGCCGu -3'
miRNA:   3'- cUCGC-GGUACCCCGCG-GCG----------CAG-CGGC- -5'
29428 3' -64.9 NC_006151.1 + 3250 0.74 0.160146
Target:  5'- cGGCGgCGgagcGGGGCGCCGCGgCGCgCGg -3'
miRNA:   3'- cUCGCgGUa---CCCCGCGGCGCaGCG-GC- -5'
29428 3' -64.9 NC_006151.1 + 17368 0.74 0.160146
Target:  5'- cGGCGCCGUGGGGUcgGaCCGUGUcCGCaCGa -3'
miRNA:   3'- cUCGCGGUACCCCG--C-GGCGCA-GCG-GC- -5'
29428 3' -64.9 NC_006151.1 + 95124 0.74 0.160146
Target:  5'- uGGCGgCGUuGaGGCGCCGCGcCGCCGg -3'
miRNA:   3'- cUCGCgGUAcC-CCGCGGCGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 135012 0.74 0.164053
Target:  5'- gGGGCGCgGgGGGGCagcagcgggGCCGCGUCGUCc -3'
miRNA:   3'- -CUCGCGgUaCCCCG---------CGGCGCAGCGGc -5'
29428 3' -64.9 NC_006151.1 + 63751 0.74 0.168045
Target:  5'- -cGCGUCGgcGGGGCGuccucggcgcccCCGCGUCGCCa -3'
miRNA:   3'- cuCGCGGUa-CCCCGC------------GGCGCAGCGGc -5'
29428 3' -64.9 NC_006151.1 + 69426 0.74 0.168045
Target:  5'- -cGCGCCA-GGcGGCGCCGC--CGCCGu -3'
miRNA:   3'- cuCGCGGUaCC-CCGCGGCGcaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 70636 0.74 0.168045
Target:  5'- cGGCGCCGUGGccgcgcgcgaGGCGCCcguccucacgcGCGcCGCCGg -3'
miRNA:   3'- cUCGCGGUACC----------CCGCGG-----------CGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 3860 0.73 0.176291
Target:  5'- gGAG-GCCGgagGGGGCGCC-CGcCGCCGc -3'
miRNA:   3'- -CUCgCGGUa--CCCCGCGGcGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 100417 0.73 0.184894
Target:  5'- -cGCGCCGacgcgGGGGCGCUGCG-CGgCGu -3'
miRNA:   3'- cuCGCGGUa----CCCCGCGGCGCaGCgGC- -5'
29428 3' -64.9 NC_006151.1 + 58171 0.73 0.189334
Target:  5'- aGAGCGCCAcca-GCGCCGCGUUGCUc -3'
miRNA:   3'- -CUCGCGGUacccCGCGGCGCAGCGGc -5'
29428 3' -64.9 NC_006151.1 + 64609 0.73 0.189334
Target:  5'- --aCGCCAgc-GGCGCCGCGcCGCCGg -3'
miRNA:   3'- cucGCGGUaccCCGCGGCGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 130714 0.73 0.198028
Target:  5'- gGGGCgGCCcgGGGGCccgcgcgGCCGCGgcgcagCGCCa -3'
miRNA:   3'- -CUCG-CGGuaCCCCG-------CGGCGCa-----GCGGc -5'
29428 3' -64.9 NC_006151.1 + 71577 0.73 0.198495
Target:  5'- cGGGCGggcauCCuccGcGGGCGCCGCGUCGUCa -3'
miRNA:   3'- -CUCGC-----GGua-C-CCCGCGGCGCAGCGGc -5'
29428 3' -64.9 NC_006151.1 + 58685 0.72 0.203218
Target:  5'- -cGCGCCGUGc-GCGCCGCGccacagCGCCGg -3'
miRNA:   3'- cuCGCGGUACccCGCGGCGCa-----GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 136641 0.72 0.205135
Target:  5'- cGGCGcCCGUGGGGCGCucgccccucggggagCGCGcggcCGCCGc -3'
miRNA:   3'- cUCGC-GGUACCCCGCG---------------GCGCa---GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 102212 0.72 0.207067
Target:  5'- cGGCGCCcgcacccacggGGaGGCGCCGUG-CGCCGu -3'
miRNA:   3'- cUCGCGGua---------CC-CCGCGGCGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 96596 0.72 0.208039
Target:  5'- aGGCGCCGggcgcGGGcGCGCCGaCGUCGUg- -3'
miRNA:   3'- cUCGCGGUa----CCC-CGCGGC-GCAGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.