miRNA display CGI


Results 21 - 40 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 3' -64.9 NC_006151.1 + 102377 0.66 0.496239
Target:  5'- -cGCGcCCGUGGccaagcuGGCGCuggucgcggcgCGCGUCGCgCGg -3'
miRNA:   3'- cuCGC-GGUACC-------CCGCG-----------GCGCAGCG-GC- -5'
29428 3' -64.9 NC_006151.1 + 74855 0.66 0.494419
Target:  5'- uGGCGUCGcGGaaGGCGCCGCGcaccgcggccaccgUgGCCGg -3'
miRNA:   3'- cUCGCGGUaCC--CCGCGGCGC--------------AgCGGC- -5'
29428 3' -64.9 NC_006151.1 + 2223 0.66 0.488074
Target:  5'- cGGCGCCcccGGcGGCGgCGCGgaCGCUGg -3'
miRNA:   3'- cUCGCGGua-CC-CCGCgGCGCa-GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 45203 0.66 0.488074
Target:  5'- cGGCGaCG-GGGuGCGCCGCGcUCGCg- -3'
miRNA:   3'- cUCGCgGUaCCC-CGCGGCGC-AGCGgc -5'
29428 3' -64.9 NC_006151.1 + 53977 0.66 0.488074
Target:  5'- cGGCGCCuccGcGGGCGUCGCGgcgaGCUc -3'
miRNA:   3'- cUCGCGGua-C-CCCGCGGCGCag--CGGc -5'
29428 3' -64.9 NC_006151.1 + 103786 0.66 0.488074
Target:  5'- gGAGCGC--UGGcGGCGCUGCaGgccgCGCUGu -3'
miRNA:   3'- -CUCGCGguACC-CCGCGGCG-Ca---GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 37882 0.66 0.488074
Target:  5'- -cGCGCCggGGaGGCGaCCGuCGagGCCc -3'
miRNA:   3'- cuCGCGGuaCC-CCGC-GGC-GCagCGGc -5'
29428 3' -64.9 NC_006151.1 + 82617 0.66 0.488074
Target:  5'- -cGCGCgc--GGGCGCCGCGgugggCGCgGg -3'
miRNA:   3'- cuCGCGguacCCCGCGGCGCa----GCGgC- -5'
29428 3' -64.9 NC_006151.1 + 97625 0.66 0.485367
Target:  5'- cGAGCGgCGcgcggccaugucguUGGuGcGCGCCGCcuccugGUCGCCGc -3'
miRNA:   3'- -CUCGCgGU--------------ACC-C-CGCGGCG------CAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 81556 0.66 0.482666
Target:  5'- cGGUGCaCAUGGccguGGUgcggagcagggucucGCgCGCGUCGCCGg -3'
miRNA:   3'- cUCGCG-GUACC----CCG---------------CG-GCGCAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 70944 0.66 0.479077
Target:  5'- cGGCGCCuucucGGcGGUG-CGCGUgGCCGu -3'
miRNA:   3'- cUCGCGGua---CC-CCGCgGCGCAgCGGC- -5'
29428 3' -64.9 NC_006151.1 + 96311 0.66 0.479077
Target:  5'- uGAGCGCCGacUGcaGGcCGCgCGCGUagagCGCCGg -3'
miRNA:   3'- -CUCGCGGU--ACc-CC-GCG-GCGCA----GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 120756 0.66 0.479077
Target:  5'- -cGCGUCAUGgccuGGGUGCgGCGccCGCUGg -3'
miRNA:   3'- cuCGCGGUAC----CCCGCGgCGCa-GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 11993 0.66 0.479077
Target:  5'- -cGCGCCGcugucUGuGGCGCC-CGUCGUCu -3'
miRNA:   3'- cuCGCGGU-----ACcCCGCGGcGCAGCGGc -5'
29428 3' -64.9 NC_006151.1 + 125463 0.66 0.479077
Target:  5'- cAGCGCCGUGGccacgGCCGCGcUCgGCCa -3'
miRNA:   3'- cUCGCGGUACCccg--CGGCGC-AG-CGGc -5'
29428 3' -64.9 NC_006151.1 + 130521 0.66 0.479077
Target:  5'- cGGGCGC----GGGCGUCGCGUacaCGCCc -3'
miRNA:   3'- -CUCGCGguacCCCGCGGCGCA---GCGGc -5'
29428 3' -64.9 NC_006151.1 + 9045 0.66 0.475501
Target:  5'- gGGGCGCCccgcgugcuccgGGGGCGCCG-GcCgGCCa -3'
miRNA:   3'- -CUCGCGGua----------CCCCGCGGCgCaG-CGGc -5'
29428 3' -64.9 NC_006151.1 + 104553 0.66 0.470163
Target:  5'- cGAGCugGCCGcccUGGGcGCGCgGCG-CGCgGa -3'
miRNA:   3'- -CUCG--CGGU---ACCC-CGCGgCGCaGCGgC- -5'
29428 3' -64.9 NC_006151.1 + 96863 0.66 0.470163
Target:  5'- -cGCGCCcgccGGGCGCgGCG-CGCgCGg -3'
miRNA:   3'- cuCGCGGuac-CCCGCGgCGCaGCG-GC- -5'
29428 3' -64.9 NC_006151.1 + 85638 0.66 0.470163
Target:  5'- cGGCGCCAgcgGGGacGCGcCCGCcUCGCg- -3'
miRNA:   3'- cUCGCGGUa--CCC--CGC-GGCGcAGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.