miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 3' -64.9 NC_006151.1 + 27085 0.72 0.212959
Target:  5'- aGGGCGCgGcgcaGGGCGCgCGUGUCGCCc -3'
miRNA:   3'- -CUCGCGgUac--CCCGCG-GCGCAGCGGc -5'
29428 3' -64.9 NC_006151.1 + 66659 0.72 0.212959
Target:  5'- cGAGCGCCAUGGcGGCGgUG-GaCGCCa -3'
miRNA:   3'- -CUCGCGGUACC-CCGCgGCgCaGCGGc -5'
29428 3' -64.9 NC_006151.1 + 112590 0.72 0.212959
Target:  5'- cGGGCuUCGUGGaGGcCGCCGCGgCGCCGc -3'
miRNA:   3'- -CUCGcGGUACC-CC-GCGGCGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 62045 0.72 0.217978
Target:  5'- -uGCGCCgcGUGGcGGUGCaCGCGcgCGCCGu -3'
miRNA:   3'- cuCGCGG--UACC-CCGCG-GCGCa-GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 59667 0.72 0.217978
Target:  5'- cAGCGCCucGGGGaCGCgCGCGcacgCGCCGa -3'
miRNA:   3'- cUCGCGGuaCCCC-GCG-GCGCa---GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 122952 0.72 0.223098
Target:  5'- cGGCGCCGcggGGGGCGCgGa--CGCCGg -3'
miRNA:   3'- cUCGCGGUa--CCCCGCGgCgcaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 5616 0.72 0.223098
Target:  5'- cGGCGgag-GGGGCGCCGCcGcCGCCGg -3'
miRNA:   3'- cUCGCgguaCCCCGCGGCG-CaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 34625 0.72 0.228319
Target:  5'- aGGCGCgGgUGGGGCGaCCGCGggggUCGCgGg -3'
miRNA:   3'- cUCGCGgU-ACCCCGC-GGCGC----AGCGgC- -5'
29428 3' -64.9 NC_006151.1 + 81999 0.71 0.233644
Target:  5'- cGGCgGCCA--GGGCgGCCGCGUgCGCCGc -3'
miRNA:   3'- cUCG-CGGUacCCCG-CGGCGCA-GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 64288 0.71 0.233644
Target:  5'- uGAGCGCCGcguugucGGGcGUGCCGCagcgCGCCGu -3'
miRNA:   3'- -CUCGCGGUa------CCC-CGCGGCGca--GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 67755 0.71 0.233644
Target:  5'- cGGCcCCGUcGGGGUGCgGCGUCGCg- -3'
miRNA:   3'- cUCGcGGUA-CCCCGCGgCGCAGCGgc -5'
29428 3' -64.9 NC_006151.1 + 52499 0.71 0.233644
Target:  5'- cGGGCGCCAgcccGGGGCGCUGCaggaaGUUGUa- -3'
miRNA:   3'- -CUCGCGGUa---CCCCGCGGCG-----CAGCGgc -5'
29428 3' -64.9 NC_006151.1 + 21441 0.71 0.235803
Target:  5'- -cGCGgCGUGGGGUggcccccggcggcguGgucCCGCGUCGCCGg -3'
miRNA:   3'- cuCGCgGUACCCCG---------------C---GGCGCAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 111359 0.71 0.239073
Target:  5'- uGGGCGCgc-GGGGCgagggccccucGCCGuCGUCGCCGc -3'
miRNA:   3'- -CUCGCGguaCCCCG-----------CGGC-GCAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 141748 0.71 0.239073
Target:  5'- gGGGCGC---GGGGCGCgCgccccggugGCGUCGCCGg -3'
miRNA:   3'- -CUCGCGguaCCCCGCG-G---------CGCAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 40049 0.71 0.244606
Target:  5'- gGGGCGCCGUGGagacccaccGGC-CCGCGggggccucgggCGCCGg -3'
miRNA:   3'- -CUCGCGGUACC---------CCGcGGCGCa----------GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 8286 0.71 0.244606
Target:  5'- aGAGUGUCcccgcGcGGGCGCCGCGUC-CCGc -3'
miRNA:   3'- -CUCGCGGua---C-CCCGCGGCGCAGcGGC- -5'
29428 3' -64.9 NC_006151.1 + 102693 0.71 0.250246
Target:  5'- gGGGCGCCcgGcgcGGGCGgCGCGgccgaGCCGa -3'
miRNA:   3'- -CUCGCGGuaC---CCCGCgGCGCag---CGGC- -5'
29428 3' -64.9 NC_006151.1 + 76699 0.71 0.250246
Target:  5'- aGAGUGgCGcGGGcGCGCCGCGgcCGCCu -3'
miRNA:   3'- -CUCGCgGUaCCC-CGCGGCGCa-GCGGc -5'
29428 3' -64.9 NC_006151.1 + 20466 0.71 0.255992
Target:  5'- uGGCGCCGgucccccgggGGGGCGCgGgGgUCGUCGg -3'
miRNA:   3'- cUCGCGGUa---------CCCCGCGgCgC-AGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.