miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 3' -64.9 NC_006151.1 + 142311 0.75 0.131806
Target:  5'- cGAGCGCCGUaugGGGGC-CCGCG-CGCUc -3'
miRNA:   3'- -CUCGCGGUA---CCCCGcGGCGCaGCGGc -5'
29428 3' -64.9 NC_006151.1 + 141748 0.71 0.239073
Target:  5'- gGGGCGC---GGGGCGCgCgccccggugGCGUCGCCGg -3'
miRNA:   3'- -CUCGCGguaCCCCGCG-G---------CGCAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 139918 0.67 0.418563
Target:  5'- -cGCGCCGcGGGcucguCGCCGUGggcCGCCGu -3'
miRNA:   3'- cuCGCGGUaCCCc----GCGGCGCa--GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 139640 0.75 0.138424
Target:  5'- cGGCGCCGgcgcgGGGGuCGCgGCGggcgCGCCGc -3'
miRNA:   3'- cUCGCGGUa----CCCC-GCGgCGCa---GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 137477 0.69 0.333521
Target:  5'- aGGCGCCcUGGGacgacgaCGCCGCccUCGCCGa -3'
miRNA:   3'- cUCGCGGuACCCc------GCGGCGc-AGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 137396 0.75 0.131806
Target:  5'- aGAGCGCCugcccgccggGGGGCGCCcuCGcCGCCGc -3'
miRNA:   3'- -CUCGCGGua--------CCCCGCGGc-GCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 136986 0.7 0.292758
Target:  5'- -cGCGCCGggcgGcGGGCGCgCGCGcacggCGCUGg -3'
miRNA:   3'- cuCGCGGUa---C-CCCGCG-GCGCa----GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 136940 0.69 0.312636
Target:  5'- cGGGCGCCGac-GGCGCCGUccugCGCCGc -3'
miRNA:   3'- -CUCGCGGUaccCCGCGGCGca--GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 136641 0.72 0.205135
Target:  5'- cGGCGcCCGUGGGGCGCucgccccucggggagCGCGcggcCGCCGc -3'
miRNA:   3'- cUCGC-GGUACCCCGCG---------------GCGCa---GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 136084 0.69 0.322257
Target:  5'- gGAGCGCCcgcUGcgcuccaucgcggucGGGCGCCGCGg-GCUGa -3'
miRNA:   3'- -CUCGCGGu--AC---------------CCCGCGGCGCagCGGC- -5'
29428 3' -64.9 NC_006151.1 + 135163 0.66 0.506301
Target:  5'- cGGGCgcgGCCcgGacGGGCGCCGgcugcCGcCGCCGg -3'
miRNA:   3'- -CUCG---CGGuaC--CCCGCGGC-----GCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 135012 0.74 0.164053
Target:  5'- gGGGCGCgGgGGGGCagcagcgggGCCGCGUCGUCc -3'
miRNA:   3'- -CUCGCGgUaCCCCG---------CGGCGCAGCGGc -5'
29428 3' -64.9 NC_006151.1 + 133616 0.69 0.35541
Target:  5'- gGGGCGUC-UGGGG-GUCGCGgcgGCCGg -3'
miRNA:   3'- -CUCGCGGuACCCCgCGGCGCag-CGGC- -5'
29428 3' -64.9 NC_006151.1 + 131866 0.67 0.443942
Target:  5'- -cGCGCC--GGcGGCGUCGgGUCGCa- -3'
miRNA:   3'- cuCGCGGuaCC-CCGCGGCgCAGCGgc -5'
29428 3' -64.9 NC_006151.1 + 131778 0.69 0.333521
Target:  5'- -cGCgGCCGc-GGGCGCCGCcGUCGUCa -3'
miRNA:   3'- cuCG-CGGUacCCCGCGGCG-CAGCGGc -5'
29428 3' -64.9 NC_006151.1 + 131556 0.75 0.135078
Target:  5'- cGGGCGCCGcacGGGCcCCGCGUCGCUc -3'
miRNA:   3'- -CUCGCGGUac-CCCGcGGCGCAGCGGc -5'
29428 3' -64.9 NC_006151.1 + 130886 0.68 0.362928
Target:  5'- cGGCgGCgGUGGaGGCGgCGgcCGUCGCCGu -3'
miRNA:   3'- cUCG-CGgUACC-CCGCgGC--GCAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 130714 0.73 0.198028
Target:  5'- gGGGCgGCCcgGGGGCccgcgcgGCCGCGgcgcagCGCCa -3'
miRNA:   3'- -CUCG-CGGuaCCCCG-------CGGCGCa-----GCGGc -5'
29428 3' -64.9 NC_006151.1 + 130521 0.66 0.479077
Target:  5'- cGGGCGC----GGGCGUCGCGUacaCGCCc -3'
miRNA:   3'- -CUCGCGguacCCCGCGGCGCA---GCGGc -5'
29428 3' -64.9 NC_006151.1 + 130329 0.7 0.273269
Target:  5'- -cGCGCUcgGGGagcucgcGCGCCGCGgCGUCGu -3'
miRNA:   3'- cuCGCGGuaCCC-------CGCGGCGCaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.