miRNA display CGI


Results 21 - 40 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 3' -64.9 NC_006151.1 + 129336 0.71 0.255992
Target:  5'- uAGCgGCCccGGGGCgGCCgGCG-CGCCGa -3'
miRNA:   3'- cUCG-CGGuaCCCCG-CGG-CGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 129112 0.69 0.325746
Target:  5'- cGAGCGCCA-GGGccgaggcGCGCUGgG-CGCCa -3'
miRNA:   3'- -CUCGCGGUaCCC-------CGCGGCgCaGCGGc -5'
29428 3' -64.9 NC_006151.1 + 128964 0.67 0.452592
Target:  5'- uAGCGCCAguaGGuGGCcagcaCCGCG-CGCCa -3'
miRNA:   3'- cUCGCGGUa--CC-CCGc----GGCGCaGCGGc -5'
29428 3' -64.9 NC_006151.1 + 128894 0.67 0.443942
Target:  5'- cAGCaGCaugacggugGGGGCGUCGCGcUCGUCGu -3'
miRNA:   3'- cUCG-CGgua------CCCCGCGGCGC-AGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 128229 0.67 0.461333
Target:  5'- cGAGC-UCGU-GGGCGCCaG-GUCGCCGa -3'
miRNA:   3'- -CUCGcGGUAcCCCGCGG-CgCAGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 127856 0.8 0.060512
Target:  5'- -uGCGCCGgagGGGGCGCCGCc-CGCCGc -3'
miRNA:   3'- cuCGCGGUa--CCCCGCGGCGcaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 127541 0.7 0.286355
Target:  5'- gGGGC-CCAgGGGGCGUCGuCGUCgugGCCGc -3'
miRNA:   3'- -CUCGcGGUaCCCCGCGGC-GCAG---CGGC- -5'
29428 3' -64.9 NC_006151.1 + 126411 0.67 0.443942
Target:  5'- -cGCGUC--GGGGCGauggccaCGCGcCGCCGg -3'
miRNA:   3'- cuCGCGGuaCCCCGCg------GCGCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 126070 0.69 0.333521
Target:  5'- uGGGUGCCAcGGGG-GCCGUGaucUCgGCCGu -3'
miRNA:   3'- -CUCGCGGUaCCCCgCGGCGC---AG-CGGC- -5'
29428 3' -64.9 NC_006151.1 + 126035 0.67 0.443942
Target:  5'- cGGCGaCGU-GGGCGCCGCcGUCGgCa -3'
miRNA:   3'- cUCGCgGUAcCCCGCGGCG-CAGCgGc -5'
29428 3' -64.9 NC_006151.1 + 125463 0.66 0.479077
Target:  5'- cAGCGCCGUGGccacgGCCGCGcUCgGCCa -3'
miRNA:   3'- cUCGCGGUACCccg--CGGCGC-AG-CGGc -5'
29428 3' -64.9 NC_006151.1 + 123075 0.68 0.394086
Target:  5'- cGAGCGCC--GGcGGCGCCuguacGCGgacCGCCu -3'
miRNA:   3'- -CUCGCGGuaCC-CCGCGG-----CGCa--GCGGc -5'
29428 3' -64.9 NC_006151.1 + 122952 0.72 0.223098
Target:  5'- cGGCGCCGcggGGGGCGCgGa--CGCCGg -3'
miRNA:   3'- cUCGCGGUa--CCCCGCGgCgcaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 122910 0.69 0.348003
Target:  5'- cGAGCGCCuccucgagGGcGGCGacgaCGCGgaCGCCGa -3'
miRNA:   3'- -CUCGCGGua------CC-CCGCg---GCGCa-GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 122388 0.67 0.418563
Target:  5'- -cGCGCCGcGGGcGCGCgcuggcgGCGcUCGCCGc -3'
miRNA:   3'- cuCGCGGUaCCC-CGCGg------CGC-AGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 121981 0.68 0.362928
Target:  5'- uGAGCGCacCAU-GGGCGgCGCGU-GCCGc -3'
miRNA:   3'- -CUCGCG--GUAcCCCGCgGCGCAgCGGC- -5'
29428 3' -64.9 NC_006151.1 + 121933 0.68 0.394086
Target:  5'- -cGUGCUG-GGGGCGCUGgcCGcCGCCGg -3'
miRNA:   3'- cuCGCGGUaCCCCGCGGC--GCaGCGGC- -5'
29428 3' -64.9 NC_006151.1 + 121412 0.69 0.319486
Target:  5'- cGGCGCgGgcGGGGaCGUCGCGgggcucgCGCCGg -3'
miRNA:   3'- cUCGCGgUa-CCCC-GCGGCGCa------GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 120756 0.66 0.479077
Target:  5'- -cGCGUCAUGgccuGGGUGCgGCGccCGCUGg -3'
miRNA:   3'- cuCGCGGUAC----CCCGCGgCGCa-GCGGC- -5'
29428 3' -64.9 NC_006151.1 + 119037 0.77 0.095458
Target:  5'- cGGGCGCCAaggacGGcGGCGCCGCGgcCGCCu -3'
miRNA:   3'- -CUCGCGGUa----CC-CCGCGGCGCa-GCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.