miRNA display CGI


Results 41 - 60 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 5' -56 NC_006151.1 + 46593 0.68 0.783074
Target:  5'- gGCGGCcgugcuGAGGCGCgaGCAGAGAcggACccGGUg -3'
miRNA:   3'- gCGCCG------CUCCGCG--UGUUUCU---UGa-CCA- -5'
29428 5' -56 NC_006151.1 + 47768 0.67 0.827636
Target:  5'- uGCGGCGAu-CGCGCc--GAGCUGGa -3'
miRNA:   3'- gCGCCGCUccGCGUGuuuCUUGACCa -5'
29428 5' -56 NC_006151.1 + 52277 0.7 0.664334
Target:  5'- uCGUGGUcucGGGGCGCGCAAAGucguAgUGGc -3'
miRNA:   3'- -GCGCCG---CUCCGCGUGUUUCu---UgACCa -5'
29428 5' -56 NC_006151.1 + 54403 0.71 0.612819
Target:  5'- gCGCGGCcucGGCGC-CGAGGcGCUGGc -3'
miRNA:   3'- -GCGCCGcu-CCGCGuGUUUCuUGACCa -5'
29428 5' -56 NC_006151.1 + 55974 0.71 0.623124
Target:  5'- gGUGuGCGAGGUGCGCGAGGuGCccGGg -3'
miRNA:   3'- gCGC-CGCUCCGCGUGUUUCuUGa-CCa -5'
29428 5' -56 NC_006151.1 + 56294 0.68 0.818183
Target:  5'- cCGCGGCgGAGGCggacgccGCGCGGugccuGAGcCUGGg -3'
miRNA:   3'- -GCGCCG-CUCCG-------CGUGUUu----CUU-GACCa -5'
29428 5' -56 NC_006151.1 + 57835 0.7 0.664334
Target:  5'- cCGCGGa-GGGCGCACGGgugcuccacGGcGCUGGUc -3'
miRNA:   3'- -GCGCCgcUCCGCGUGUU---------UCuUGACCA- -5'
29428 5' -56 NC_006151.1 + 58326 0.72 0.565718
Target:  5'- gGCGGCGcgccggccuccgcguAGGCGCGCGcgaAGCUGGUc -3'
miRNA:   3'- gCGCCGC---------------UCCGCGUGUuucUUGACCA- -5'
29428 5' -56 NC_006151.1 + 58393 0.7 0.71518
Target:  5'- gCGCGGCGcagccggccauGGCGCGCA----GCUGGg -3'
miRNA:   3'- -GCGCCGCu----------CCGCGUGUuucuUGACCa -5'
29428 5' -56 NC_006151.1 + 59003 0.69 0.735079
Target:  5'- gCGCGGCGuccagcGGCGCGuCGAAGccgccCUGGg -3'
miRNA:   3'- -GCGCCGCu-----CCGCGU-GUUUCuu---GACCa -5'
29428 5' -56 NC_006151.1 + 59480 0.73 0.501959
Target:  5'- -cCGGCGAGGCGCccuCGAAGAGCccGGc -3'
miRNA:   3'- gcGCCGCUCCGCGu--GUUUCUUGa-CCa -5'
29428 5' -56 NC_006151.1 + 60550 0.79 0.241472
Target:  5'- cCGCGGCGAGGCGCGCGcccaggaggccgAAGAAgCUGu- -3'
miRNA:   3'- -GCGCCGCUCCGCGUGU------------UUCUU-GACca -5'
29428 5' -56 NC_006151.1 + 63164 0.68 0.773713
Target:  5'- aCGCGGUacggggccuuGGGGCGCAC--GGGGCcGGg -3'
miRNA:   3'- -GCGCCG----------CUCCGCGUGuuUCUUGaCCa -5'
29428 5' -56 NC_006151.1 + 63482 0.73 0.541498
Target:  5'- gGCGGCGGcGGCGCcCGAAGAA--GGUg -3'
miRNA:   3'- gCGCCGCU-CCGCGuGUUUCUUgaCCA- -5'
29428 5' -56 NC_006151.1 + 63518 0.67 0.860093
Target:  5'- gGCGcGCGGGGCGguCGGGGAagacGCcGGc -3'
miRNA:   3'- gCGC-CGCUCCGCguGUUUCU----UGaCCa -5'
29428 5' -56 NC_006151.1 + 64480 0.66 0.889215
Target:  5'- cCGCGGCGGGGaCGCccGCGGGcgcGGGCggcGGg -3'
miRNA:   3'- -GCGCCGCUCC-GCG--UGUUU---CUUGa--CCa -5'
29428 5' -56 NC_006151.1 + 64550 0.68 0.77277
Target:  5'- gGCGGCGAGGCcgugGCGCGccagcucGAcGAGCaGGUc -3'
miRNA:   3'- gCGCCGCUCCG----CGUGU-------UU-CUUGaCCA- -5'
29428 5' -56 NC_006151.1 + 64753 0.7 0.71518
Target:  5'- aGCaGCGGGGCcaccguGCGCGGGG-GCUGGUu -3'
miRNA:   3'- gCGcCGCUCCG------CGUGUUUCuUGACCA- -5'
29428 5' -56 NC_006151.1 + 66798 0.69 0.758472
Target:  5'- gGCGGCGGGGCccggggacgacgacgGCgACGAGGAGgaUGGg -3'
miRNA:   3'- gCGCCGCUCCG---------------CG-UGUUUCUUg-ACCa -5'
29428 5' -56 NC_006151.1 + 66870 0.66 0.895272
Target:  5'- gGCGGCGcgaaGGGCGCGCccggccccgcgccGGAGGACg--- -3'
miRNA:   3'- gCGCCGC----UCCGCGUG-------------UUUCUUGacca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.