miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 5' -56 NC_006151.1 + 12353 0.66 0.902417
Target:  5'- aGgGGCGGGGaGCGCGAgcgGGAGaaGGUu -3'
miRNA:   3'- gCgCCGCUCCgCGUGUU---UCUUgaCCA- -5'
29428 5' -56 NC_006151.1 + 15445 0.7 0.71518
Target:  5'- cCGCGGCucGGUGUGCGAGGAcgACgGGg -3'
miRNA:   3'- -GCGCCGcuCCGCGUGUUUCU--UGaCCa -5'
29428 5' -56 NC_006151.1 + 16973 0.66 0.902417
Target:  5'- uCGcCGGCGuGGCGC-C-AGGAGC-GGUu -3'
miRNA:   3'- -GC-GCCGCuCCGCGuGuUUCUUGaCCA- -5'
29428 5' -56 NC_006151.1 + 20326 0.68 0.810295
Target:  5'- gGCGGCGAgcaGGaCGCGCGAcacGAcGCUGGc -3'
miRNA:   3'- gCGCCGCU---CC-GCGUGUUu--CU-UGACCa -5'
29428 5' -56 NC_006151.1 + 21087 0.74 0.473153
Target:  5'- gGCGGCGAGGaggaGCcccGCGGGGAGCcgGGUc -3'
miRNA:   3'- gCGCCGCUCCg---CG---UGUUUCUUGa-CCA- -5'
29428 5' -56 NC_006151.1 + 21313 0.66 0.895933
Target:  5'- aGCGGUGGcgcgagacgcccGGCGCGgCGGGGGuccgcgGCUGGa -3'
miRNA:   3'- gCGCCGCU------------CCGCGU-GUUUCU------UGACCa -5'
29428 5' -56 NC_006151.1 + 21493 0.66 0.889215
Target:  5'- gGCGGcCGGGGgGCGCGGgcgucaccGGGGCgGGc -3'
miRNA:   3'- gCGCC-GCUCCgCGUGUU--------UCUUGaCCa -5'
29428 5' -56 NC_006151.1 + 23006 0.66 0.902417
Target:  5'- gCGCGGgUGGGG-GCGCGGGGG--UGGUg -3'
miRNA:   3'- -GCGCC-GCUCCgCGUGUUUCUugACCA- -5'
29428 5' -56 NC_006151.1 + 26985 0.75 0.4182
Target:  5'- gCGCaGCGGGGCGCucugcuCGggcGAGAGCUGGa -3'
miRNA:   3'- -GCGcCGCUCCGCGu-----GU---UUCUUGACCa -5'
29428 5' -56 NC_006151.1 + 27443 0.66 0.877991
Target:  5'- gCGCGGCGgacgcggugggucggGGGCGgGCGGucGAGCgGGg -3'
miRNA:   3'- -GCGCCGC---------------UCCGCgUGUUu-CUUGaCCa -5'
29428 5' -56 NC_006151.1 + 29443 0.7 0.694993
Target:  5'- gGCGGCGGGGagaggggaCGCGgAGGGAGCgGGc -3'
miRNA:   3'- gCGCCGCUCC--------GCGUgUUUCUUGaCCa -5'
29428 5' -56 NC_006151.1 + 29589 0.71 0.602528
Target:  5'- uCGCGGCGGcugcGGC-CGCGgcggcGGGGGCUGGUg -3'
miRNA:   3'- -GCGCCGCU----CCGcGUGU-----UUCUUGACCA- -5'
29428 5' -56 NC_006151.1 + 30842 0.68 0.810295
Target:  5'- gGCGGaGAGGaGCGaGGAGGACUGGc -3'
miRNA:   3'- gCGCCgCUCCgCGUgUUUCUUGACCa -5'
29428 5' -56 NC_006151.1 + 30958 0.68 0.773713
Target:  5'- gGCGGCccggGAGaGCGgGCGGGGGACgGGg -3'
miRNA:   3'- gCGCCG----CUC-CGCgUGUUUCUUGaCCa -5'
29428 5' -56 NC_006151.1 + 31767 0.72 0.571819
Target:  5'- gGCGGCG-GGCGCGCGccGGGC-GGc -3'
miRNA:   3'- gCGCCGCuCCGCGUGUuuCUUGaCCa -5'
29428 5' -56 NC_006151.1 + 36874 0.68 0.818183
Target:  5'- gGaCGGCGGGGCGCccccGCAGAGAcagccccGCcGGc -3'
miRNA:   3'- gC-GCCGCUCCGCG----UGUUUCU-------UGaCCa -5'
29428 5' -56 NC_006151.1 + 39348 0.71 0.643748
Target:  5'- gCGCGGCGcGGCGCcggcuCAucGuGCUGGa -3'
miRNA:   3'- -GCGCCGCuCCGCGu----GUuuCuUGACCa -5'
29428 5' -56 NC_006151.1 + 40568 0.7 0.674591
Target:  5'- gGCGGCGGcGGcCGCGgCGGAGGGCUcGGc -3'
miRNA:   3'- gCGCCGCU-CC-GCGU-GUUUCUUGA-CCa -5'
29428 5' -56 NC_006151.1 + 44512 0.67 0.83604
Target:  5'- gGCGGUGGGGaaGCGCGGGcgagaagagcGAugUGGUg -3'
miRNA:   3'- gCGCCGCUCCg-CGUGUUU----------CUugACCA- -5'
29428 5' -56 NC_006151.1 + 46498 0.7 0.684814
Target:  5'- aGCaGCGGGGUGCACAcgGAGGAuCUGa- -3'
miRNA:   3'- gCGcCGCUCCGCGUGU--UUCUU-GACca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.