miRNA display CGI


Results 21 - 40 of 153 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 5' -56 NC_006151.1 + 121651 0.72 0.571819
Target:  5'- uCGCGGCGgacGGGCGgGCGGAGGGggGGa -3'
miRNA:   3'- -GCGCCGC---UCCGCgUGUUUCUUgaCCa -5'
29428 5' -56 NC_006151.1 + 31767 0.72 0.571819
Target:  5'- gGCGGCG-GGCGCGCGccGGGC-GGc -3'
miRNA:   3'- gCGCCGCuCCGCGUGUuuCUUGaCCa -5'
29428 5' -56 NC_006151.1 + 103879 0.72 0.571819
Target:  5'- aCGCuGGuCGAGGCGCGCcaccuGGcGCUGGa -3'
miRNA:   3'- -GCG-CC-GCUCCGCGUGuu---UCuUGACCa -5'
29428 5' -56 NC_006151.1 + 103059 0.72 0.575895
Target:  5'- cCGaGGCGcAGGCGCACGGGcaccuggagcggcgcGAGCUGGa -3'
miRNA:   3'- -GCgCCGC-UCCGCGUGUUU---------------CUUGACCa -5'
29428 5' -56 NC_006151.1 + 5091 0.72 0.582021
Target:  5'- cCGCGGCG-GGCGCcgGCGGAGAcGgUGGc -3'
miRNA:   3'- -GCGCCGCuCCGCG--UGUUUCU-UgACCa -5'
29428 5' -56 NC_006151.1 + 103683 0.72 0.591235
Target:  5'- gCGCGGCGGGggugcuGCGCGCcGccguggagcacccGGAGCUGGg -3'
miRNA:   3'- -GCGCCGCUC------CGCGUGuU-------------UCUUGACCa -5'
29428 5' -56 NC_006151.1 + 130945 0.72 0.59226
Target:  5'- gGCGGCGGGGgguCGCGCGggcgcGGGGGCcGGUa -3'
miRNA:   3'- gCGCCGCUCC---GCGUGU-----UUCUUGaCCA- -5'
29428 5' -56 NC_006151.1 + 4706 0.71 0.602528
Target:  5'- gGCGGCcccgcuguagauGAGGCGCACGAGGGccucguGCUGc- -3'
miRNA:   3'- gCGCCG------------CUCCGCGUGUUUCU------UGACca -5'
29428 5' -56 NC_006151.1 + 90414 0.71 0.602528
Target:  5'- gGCGGCGAGGaGCGCGAcGAGCa--- -3'
miRNA:   3'- gCGCCGCUCCgCGUGUUuCUUGacca -5'
29428 5' -56 NC_006151.1 + 29589 0.71 0.602528
Target:  5'- uCGCGGCGGcugcGGC-CGCGgcggcGGGGGCUGGUg -3'
miRNA:   3'- -GCGCCGCU----CCGcGUGU-----UUCUUGACCA- -5'
29428 5' -56 NC_006151.1 + 123120 0.71 0.611789
Target:  5'- gGCGGCGAGccuggcgcagugcGUGCGCGAGcagcggcgcGAGCUGGa -3'
miRNA:   3'- gCGCCGCUC-------------CGCGUGUUU---------CUUGACCa -5'
29428 5' -56 NC_006151.1 + 97506 0.71 0.612819
Target:  5'- uCGCGGCGGuGGCGCugcguguagACAAAGAcCaGGUa -3'
miRNA:   3'- -GCGCCGCU-CCGCG---------UGUUUCUuGaCCA- -5'
29428 5' -56 NC_006151.1 + 8087 0.71 0.612819
Target:  5'- gCGUGGCGGGGCGUgGCAGAGGGggagGGg -3'
miRNA:   3'- -GCGCCGCUCCGCG-UGUUUCUUga--CCa -5'
29428 5' -56 NC_006151.1 + 129445 0.71 0.612819
Target:  5'- aGUgGGCGGGGCGCACGGccguGGGCgGGa -3'
miRNA:   3'- gCG-CCGCUCCGCGUGUUu---CUUGaCCa -5'
29428 5' -56 NC_006151.1 + 54403 0.71 0.612819
Target:  5'- gCGCGGCcucGGCGC-CGAGGcGCUGGc -3'
miRNA:   3'- -GCGCCGcu-CCGCGuGUUUCuUGACCa -5'
29428 5' -56 NC_006151.1 + 55974 0.71 0.623124
Target:  5'- gGUGuGCGAGGUGCGCGAGGuGCccGGg -3'
miRNA:   3'- gCGC-CGCUCCGCGUGUUUCuUGa-CCa -5'
29428 5' -56 NC_006151.1 + 4617 0.71 0.623124
Target:  5'- gGCGcGUGGacccGGCGCugGcAGAACUGGUu -3'
miRNA:   3'- gCGC-CGCU----CCGCGugUuUCUUGACCA- -5'
29428 5' -56 NC_006151.1 + 120790 0.71 0.642717
Target:  5'- aCGCGGCcgacgcgGAGcgcgccGCGCGCGAGGuGCUGGa -3'
miRNA:   3'- -GCGCCG-------CUC------CGCGUGUUUCuUGACCa -5'
29428 5' -56 NC_006151.1 + 112011 0.71 0.643748
Target:  5'- aCGCGGCGGcGGCGauuuuccCGgcGGGAGCUGGg -3'
miRNA:   3'- -GCGCCGCU-CCGCgu-----GU--UUCUUGACCa -5'
29428 5' -56 NC_006151.1 + 133502 0.71 0.643748
Target:  5'- gGCGGCGcgggGGGCGCGgGAGGAGCc--- -3'
miRNA:   3'- gCGCCGC----UCCGCGUgUUUCUUGacca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.