miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 5' -56 NC_006151.1 + 137762 0.66 0.889215
Target:  5'- cCGCGGCcuGGCGCGCGugcuccagcAGGccgugcuGCUGGa -3'
miRNA:   3'- -GCGCCGcuCCGCGUGU---------UUCu------UGACCa -5'
29428 5' -56 NC_006151.1 + 139657 0.66 0.889215
Target:  5'- uCGCGGCG-GGCGCGCcgcccGACaGGc -3'
miRNA:   3'- -GCGCCGCuCCGCGUGuuuc-UUGaCCa -5'
29428 5' -56 NC_006151.1 + 64480 0.66 0.889215
Target:  5'- cCGCGGCGGGGaCGCccGCGGGcgcGGGCggcGGg -3'
miRNA:   3'- -GCGCCGCUCC-GCG--UGUUU---CUUGa--CCa -5'
29428 5' -56 NC_006151.1 + 134029 0.66 0.887844
Target:  5'- gCGCGGCGAcGaGCGUcagcgagagcccgGCGGAGGAgaccaucCUGGUg -3'
miRNA:   3'- -GCGCCGCU-C-CGCG-------------UGUUUCUU-------GACCA- -5'
29428 5' -56 NC_006151.1 + 77109 0.66 0.882268
Target:  5'- gCGCGGCGGGcGCGCgcccACAAAGGccgaGCUc-- -3'
miRNA:   3'- -GCGCCGCUC-CGCG----UGUUUCU----UGAcca -5'
29428 5' -56 NC_006151.1 + 3054 0.66 0.882268
Target:  5'- gGCGuGCGAguccGGCGUGCAGAGGcGgUGGg -3'
miRNA:   3'- gCGC-CGCU----CCGCGUGUUUCU-UgACCa -5'
29428 5' -56 NC_006151.1 + 106470 0.66 0.882268
Target:  5'- uGUgGGCGcccuGGGCGCACAcgGAGAcgggccagcgGCUGGc -3'
miRNA:   3'- gCG-CCGC----UCCGCGUGU--UUCU----------UGACCa -5'
29428 5' -56 NC_006151.1 + 136638 0.66 0.882268
Target:  5'- cCGCGGCGcccgugGGGCGCucgccccuCGGGGAGCgcgcGGc -3'
miRNA:   3'- -GCGCCGC------UCCGCGu-------GUUUCUUGa---CCa -5'
29428 5' -56 NC_006151.1 + 27443 0.66 0.877991
Target:  5'- gCGCGGCGgacgcggugggucggGGGCGgGCGGucGAGCgGGg -3'
miRNA:   3'- -GCGCCGC---------------UCCGCgUGUUu-CUUGaCCa -5'
29428 5' -56 NC_006151.1 + 103003 0.66 0.875095
Target:  5'- gGCgGGCGAGGacgugaGCACGGAcGAGCgccucgGGg -3'
miRNA:   3'- gCG-CCGCUCCg-----CGUGUUU-CUUGa-----CCa -5'
29428 5' -56 NC_006151.1 + 81435 0.66 0.875095
Target:  5'- uCGCGGCGcagcgagacGGCGCACGgcgaGAGGACg--- -3'
miRNA:   3'- -GCGCCGCu--------CCGCGUGU----UUCUUGacca -5'
29428 5' -56 NC_006151.1 + 83362 0.66 0.875095
Target:  5'- gCGCGcGCGcGGGCGCGCAGGcgccGCaGGUg -3'
miRNA:   3'- -GCGC-CGC-UCCGCGUGUUUcu--UGaCCA- -5'
29428 5' -56 NC_006151.1 + 96875 0.66 0.875095
Target:  5'- gCGCGGCGcgcgcGGGgGCAUGAugGGAuguguCUGGg -3'
miRNA:   3'- -GCGCCGC-----UCCgCGUGUU--UCUu----GACCa -5'
29428 5' -56 NC_006151.1 + 116451 0.66 0.875095
Target:  5'- gGCGGCGAcGGCGUACAuguccaGGGAGacgaGGc -3'
miRNA:   3'- gCGCCGCU-CCGCGUGU------UUCUUga--CCa -5'
29428 5' -56 NC_006151.1 + 112608 0.66 0.875095
Target:  5'- cCGCGGCGccgcuGGCGCugGAcGAGCc--- -3'
miRNA:   3'- -GCGCCGCu----CCGCGugUUuCUUGacca -5'
29428 5' -56 NC_006151.1 + 132338 0.66 0.875095
Target:  5'- cCGUGGCcacguacAGGUGCAgGAAGAGCcagGGg -3'
miRNA:   3'- -GCGCCGc------UCCGCGUgUUUCUUGa--CCa -5'
29428 5' -56 NC_006151.1 + 131872 0.66 0.867701
Target:  5'- gGCGGCGucgggucgcaGGGCaGCACGgccGAGGGCgacgGGg -3'
miRNA:   3'- gCGCCGC----------UCCG-CGUGU---UUCUUGa---CCa -5'
29428 5' -56 NC_006151.1 + 129285 0.66 0.867701
Target:  5'- gCGCGGCGcguuccucGGGCGCGgc-GGAGCaUGGc -3'
miRNA:   3'- -GCGCCGC--------UCCGCGUguuUCUUG-ACCa -5'
29428 5' -56 NC_006151.1 + 5554 0.66 0.867701
Target:  5'- gGCGGCGGGcuCGUcgaGCAGGGGcucgcgguGCUGGUg -3'
miRNA:   3'- gCGCCGCUCc-GCG---UGUUUCU--------UGACCA- -5'
29428 5' -56 NC_006151.1 + 2299 0.66 0.867701
Target:  5'- gGCGGCGAcGGCGCcCGGGGucagcaccAGCgGGg -3'
miRNA:   3'- gCGCCGCU-CCGCGuGUUUC--------UUGaCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.