miRNA display CGI


Results 41 - 60 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 5' -56 NC_006151.1 + 131872 0.66 0.867701
Target:  5'- gGCGGCGucgggucgcaGGGCaGCACGgccGAGGGCgacgGGg -3'
miRNA:   3'- gCGCCGC----------UCCG-CGUGU---UUCUUGa---CCa -5'
29428 5' -56 NC_006151.1 + 89161 0.66 0.867701
Target:  5'- cCGCcucgGGCGAGGCggGCGCGGGGGucgGGg -3'
miRNA:   3'- -GCG----CCGCUCCG--CGUGUUUCUugaCCa -5'
29428 5' -56 NC_006151.1 + 134258 0.67 0.860093
Target:  5'- uCGCGGCGAGGUGCAgGc--GAUUGu- -3'
miRNA:   3'- -GCGCCGCUCCGCGUgUuucUUGACca -5'
29428 5' -56 NC_006151.1 + 63518 0.67 0.860093
Target:  5'- gGCGcGCGGGGCGguCGGGGAagacGCcGGc -3'
miRNA:   3'- gCGC-CGCUCCGCguGUUUCU----UGaCCa -5'
29428 5' -56 NC_006151.1 + 10199 0.67 0.860093
Target:  5'- uCGCGGCGcGGGCGgCggcuGCAGAGGcgGCUGcGg -3'
miRNA:   3'- -GCGCCGC-UCCGC-G----UGUUUCU--UGAC-Ca -5'
29428 5' -56 NC_006151.1 + 86577 0.67 0.852275
Target:  5'- -uCGGCGcGGGCGCGCuccGAGcuGCUGGc -3'
miRNA:   3'- gcGCCGC-UCCGCGUGu--UUCu-UGACCa -5'
29428 5' -56 NC_006151.1 + 71783 0.67 0.852275
Target:  5'- gGCGGCGGGGgcugcCGCACc---AGCUGGc -3'
miRNA:   3'- gCGCCGCUCC-----GCGUGuuucUUGACCa -5'
29428 5' -56 NC_006151.1 + 73889 0.67 0.844255
Target:  5'- aGCaGCGuGGCGU-CGuuGGGCUGGUa -3'
miRNA:   3'- gCGcCGCuCCGCGuGUuuCUUGACCA- -5'
29428 5' -56 NC_006151.1 + 99592 0.67 0.844255
Target:  5'- gGCGGCGGccGaGCGcCGCGccGGGCUGGc -3'
miRNA:   3'- gCGCCGCU--C-CGC-GUGUuuCUUGACCa -5'
29428 5' -56 NC_006151.1 + 100437 0.67 0.844255
Target:  5'- gCGCGGCGugauGGCGCagacgACGGAGGcGCUGc- -3'
miRNA:   3'- -GCGCCGCu---CCGCG-----UGUUUCU-UGACca -5'
29428 5' -56 NC_006151.1 + 44512 0.67 0.83604
Target:  5'- gGCGGUGGGGaaGCGCGGGcgagaagagcGAugUGGUg -3'
miRNA:   3'- gCGCCGCUCCg-CGUGUUU----------CUugACCA- -5'
29428 5' -56 NC_006151.1 + 96735 0.67 0.83604
Target:  5'- gGCGGCG-GGCGCgacgACGGAGGccaUGGc -3'
miRNA:   3'- gCGCCGCuCCGCG----UGUUUCUug-ACCa -5'
29428 5' -56 NC_006151.1 + 3384 0.67 0.83604
Target:  5'- gGCGGCGAGGgcCGCcuCGGAGGGCcgcggcgugUGGg -3'
miRNA:   3'- gCGCCGCUCC--GCGu-GUUUCUUG---------ACCa -5'
29428 5' -56 NC_006151.1 + 90778 0.67 0.83604
Target:  5'- gGuCGGCG-GGCGCGCAGaAGAagaaGgUGGUc -3'
miRNA:   3'- gC-GCCGCuCCGCGUGUU-UCU----UgACCA- -5'
29428 5' -56 NC_006151.1 + 112707 0.67 0.83604
Target:  5'- aCGCGGCGcuGUGCGcCAAGGccCUGGc -3'
miRNA:   3'- -GCGCCGCucCGCGU-GUUUCuuGACCa -5'
29428 5' -56 NC_006151.1 + 118795 0.67 0.83604
Target:  5'- gCGCGGCGcGGCGCAC------CUGGc -3'
miRNA:   3'- -GCGCCGCuCCGCGUGuuucuuGACCa -5'
29428 5' -56 NC_006151.1 + 129128 0.67 0.83604
Target:  5'- gGCGcGCuGGGCGC-CAAAGAGCgccGGc -3'
miRNA:   3'- gCGC-CGcUCCGCGuGUUUCUUGa--CCa -5'
29428 5' -56 NC_006151.1 + 47768 0.67 0.827636
Target:  5'- uGCGGCGAu-CGCGCc--GAGCUGGa -3'
miRNA:   3'- gCGCCGCUccGCGUGuuuCUUGACCa -5'
29428 5' -56 NC_006151.1 + 133316 0.67 0.826785
Target:  5'- gGCGGCccgugucGAGGCGCGCcGGGcGGCcGGUu -3'
miRNA:   3'- gCGCCG-------CUCCGCGUGuUUC-UUGaCCA- -5'
29428 5' -56 NC_006151.1 + 122467 0.68 0.819051
Target:  5'- gGCGGCG-GGCGCcgagGCcGGGGACgcgGGc -3'
miRNA:   3'- gCGCCGCuCCGCG----UGuUUCUUGa--CCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.