miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 5' -56 NC_006151.1 + 96230 1.07 0.003479
Target:  5'- cCGCGGCGAGGCGCACAAAGAACUGGUc -3'
miRNA:   3'- -GCGCCGCUCCGCGUGUUUCUUGACCA- -5'
29428 5' -56 NC_006151.1 + 60550 0.79 0.241472
Target:  5'- cCGCGGCGAGGCGCGCGcccaggaggccgAAGAAgCUGu- -3'
miRNA:   3'- -GCGCCGCUCCGCGUGU------------UUCUU-GACca -5'
29428 5' -56 NC_006151.1 + 90263 0.77 0.305652
Target:  5'- cCGCGGCGAagacggcGGCGC-CGAcGAGCUGGa -3'
miRNA:   3'- -GCGCCGCU-------CCGCGuGUUuCUUGACCa -5'
29428 5' -56 NC_006151.1 + 99987 0.77 0.306363
Target:  5'- gGCGGCGcuGGCGCGCGAGGAcCUGa- -3'
miRNA:   3'- gCGCCGCu-CCGCGUGUUUCUuGACca -5'
29428 5' -56 NC_006151.1 + 136993 0.77 0.328272
Target:  5'- gGCGGCGGGcGCGCGCGcacGGcGCUGGg -3'
miRNA:   3'- gCGCCGCUC-CGCGUGUu--UCuUGACCa -5'
29428 5' -56 NC_006151.1 + 6293 0.76 0.351319
Target:  5'- cCGCGGCGGcGGC-CGCcAGGAGCUGGc -3'
miRNA:   3'- -GCGCCGCU-CCGcGUGuUUCUUGACCa -5'
29428 5' -56 NC_006151.1 + 104908 0.76 0.382959
Target:  5'- aCGCGGCGGcGGCGCGCGAccGcgacggggcccucGAGCUGGc -3'
miRNA:   3'- -GCGCCGCU-CCGCGUGUU--U-------------CUUGACCa -5'
29428 5' -56 NC_006151.1 + 89664 0.76 0.382959
Target:  5'- gGUGGCGcgugcucGGGCGCACAAAGAGCgagacGGc -3'
miRNA:   3'- gCGCCGC-------UCCGCGUGUUUCUUGa----CCa -5'
29428 5' -56 NC_006151.1 + 127440 0.76 0.383794
Target:  5'- uCGUGcGCGAgagccggcGGCGCACGAAGcGCUGGg -3'
miRNA:   3'- -GCGC-CGCU--------CCGCGUGUUUCuUGACCa -5'
29428 5' -56 NC_006151.1 + 26985 0.75 0.4182
Target:  5'- gCGCaGCGGGGCGCucugcuCGggcGAGAGCUGGa -3'
miRNA:   3'- -GCGcCGCUCCGCGu-----GU---UUCUUGACCa -5'
29428 5' -56 NC_006151.1 + 135110 0.75 0.4182
Target:  5'- gGCGGCGGuaGCGCGCGGGGcgGGCUGGg -3'
miRNA:   3'- gCGCCGCUc-CGCGUGUUUC--UUGACCa -5'
29428 5' -56 NC_006151.1 + 84363 0.74 0.4628
Target:  5'- cCGCGGCGGugaucgcgaucgcGGCGCGCGGGGAcggGCgGGg -3'
miRNA:   3'- -GCGCCGCU-------------CCGCGUGUUUCU---UGaCCa -5'
29428 5' -56 NC_006151.1 + 82742 0.74 0.463736
Target:  5'- aGCGG-GAGGCGCACGGAcgacgcGGGCaUGGUg -3'
miRNA:   3'- gCGCCgCUCCGCGUGUUU------CUUG-ACCA- -5'
29428 5' -56 NC_006151.1 + 93569 0.74 0.473153
Target:  5'- cCGCGGgGgcGGGCGCGCcAAAGAGCgGGc -3'
miRNA:   3'- -GCGCCgC--UCCGCGUG-UUUCUUGaCCa -5'
29428 5' -56 NC_006151.1 + 21087 0.74 0.473153
Target:  5'- gGCGGCGAGGaggaGCcccGCGGGGAGCcgGGUc -3'
miRNA:   3'- gCGCCGCUCCg---CG---UGUUUCUUGa-CCA- -5'
29428 5' -56 NC_006151.1 + 59480 0.73 0.501959
Target:  5'- -cCGGCGAGGCGCccuCGAAGAGCccGGc -3'
miRNA:   3'- gcGCCGCUCCGCGu--GUUUCUUGa-CCa -5'
29428 5' -56 NC_006151.1 + 100698 0.73 0.501959
Target:  5'- cCGCGaGaccuggacCGAGGCGCGCGAGGAGCaGGc -3'
miRNA:   3'- -GCGC-C--------GCUCCGCGUGUUUCUUGaCCa -5'
29428 5' -56 NC_006151.1 + 63482 0.73 0.541498
Target:  5'- gGCGGCGGcGGCGCcCGAAGAA--GGUg -3'
miRNA:   3'- gCGCCGCU-CCGCGuGUUUCUUgaCCA- -5'
29428 5' -56 NC_006151.1 + 106796 0.72 0.56166
Target:  5'- cCGCGGCGGcGGUGCucguCGGGGccccGCUGGUg -3'
miRNA:   3'- -GCGCCGCU-CCGCGu---GUUUCu---UGACCA- -5'
29428 5' -56 NC_006151.1 + 58326 0.72 0.565718
Target:  5'- gGCGGCGcgccggccuccgcguAGGCGCGCGcgaAGCUGGUc -3'
miRNA:   3'- gCGCCGC---------------UCCGCGUGUuucUUGACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.