miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 5' -56 NC_006151.1 + 2299 0.66 0.867701
Target:  5'- gGCGGCGAcGGCGCcCGGGGucagcaccAGCgGGg -3'
miRNA:   3'- gCGCCGCU-CCGCGuGUUUC--------UUGaCCa -5'
29428 5' -56 NC_006151.1 + 2361 0.69 0.744897
Target:  5'- cCGCGGCGcagaAGGCGCGCAAcucGGCcGGc -3'
miRNA:   3'- -GCGCCGC----UCCGCGUGUUuc-UUGaCCa -5'
29428 5' -56 NC_006151.1 + 2590 0.68 0.77277
Target:  5'- gCGCuGGCGguAGGCGCGCGGcggcagcGGGACcGGg -3'
miRNA:   3'- -GCG-CCGC--UCCGCGUGUU-------UCUUGaCCa -5'
29428 5' -56 NC_006151.1 + 3054 0.66 0.882268
Target:  5'- gGCGuGCGAguccGGCGUGCAGAGGcGgUGGg -3'
miRNA:   3'- gCGC-CGCU----CCGCGUGUUUCU-UgACCa -5'
29428 5' -56 NC_006151.1 + 3275 0.68 0.810295
Target:  5'- gCGCGGCGAuGUGCGCc-AGGGCggccgGGUc -3'
miRNA:   3'- -GCGCCGCUcCGCGUGuuUCUUGa----CCA- -5'
29428 5' -56 NC_006151.1 + 3384 0.67 0.83604
Target:  5'- gGCGGCGAGGgcCGCcuCGGAGGGCcgcggcgugUGGg -3'
miRNA:   3'- gCGCCGCUCC--GCGu-GUUUCUUG---------ACCa -5'
29428 5' -56 NC_006151.1 + 3744 0.66 0.889215
Target:  5'- gGCGGCGGGGgaGCugGcguagccggAGGAGCcGGa -3'
miRNA:   3'- gCGCCGCUCCg-CGugU---------UUCUUGaCCa -5'
29428 5' -56 NC_006151.1 + 4217 0.68 0.819051
Target:  5'- gGCGGcCGGGGCGCgggcgggcgcggGCAGccGGAGCgGGc -3'
miRNA:   3'- gCGCC-GCUCCGCG------------UGUU--UCUUGaCCa -5'
29428 5' -56 NC_006151.1 + 4340 0.68 0.77277
Target:  5'- gGCGGCGaAGGCggcgcggacgcggGCGCAGAGGGCcucgacGGUc -3'
miRNA:   3'- gCGCCGC-UCCG-------------CGUGUUUCUUGa-----CCA- -5'
29428 5' -56 NC_006151.1 + 4617 0.71 0.623124
Target:  5'- gGCGcGUGGacccGGCGCugGcAGAACUGGUu -3'
miRNA:   3'- gCGC-CGCU----CCGCGugUuUCUUGACCA- -5'
29428 5' -56 NC_006151.1 + 4706 0.71 0.602528
Target:  5'- gGCGGCcccgcuguagauGAGGCGCACGAGGGccucguGCUGc- -3'
miRNA:   3'- gCGCCG------------CUCCGCGUGUUUCU------UGACca -5'
29428 5' -56 NC_006151.1 + 5091 0.72 0.582021
Target:  5'- cCGCGGCG-GGCGCcgGCGGAGAcGgUGGc -3'
miRNA:   3'- -GCGCCGCuCCGCG--UGUUUCU-UgACCa -5'
29428 5' -56 NC_006151.1 + 5251 0.69 0.744897
Target:  5'- gGCGGCGGGG-GCcCGGGGGGCggaGGg -3'
miRNA:   3'- gCGCCGCUCCgCGuGUUUCUUGa--CCa -5'
29428 5' -56 NC_006151.1 + 5554 0.66 0.867701
Target:  5'- gGCGGCGGGcuCGUcgaGCAGGGGcucgcgguGCUGGUg -3'
miRNA:   3'- gCGCCGCUCc-GCG---UGUUUCU--------UGACCA- -5'
29428 5' -56 NC_006151.1 + 6293 0.76 0.351319
Target:  5'- cCGCGGCGGcGGC-CGCcAGGAGCUGGc -3'
miRNA:   3'- -GCGCCGCU-CCGcGUGuUUCUUGACCa -5'
29428 5' -56 NC_006151.1 + 8087 0.71 0.612819
Target:  5'- gCGUGGCGGGGCGUgGCAGAGGGggagGGg -3'
miRNA:   3'- -GCGCCGCUCCGCG-UGUUUCUUga--CCa -5'
29428 5' -56 NC_006151.1 + 9625 0.69 0.72517
Target:  5'- gGCGGCGAGGggggaaGCGgGAGGGAgaGGc -3'
miRNA:   3'- gCGCCGCUCCg-----CGUgUUUCUUgaCCa -5'
29428 5' -56 NC_006151.1 + 10199 0.67 0.860093
Target:  5'- uCGCGGCGcGGGCGgCggcuGCAGAGGcgGCUGcGg -3'
miRNA:   3'- -GCGCCGC-UCCGC-G----UGUUUCU--UGAC-Ca -5'
29428 5' -56 NC_006151.1 + 10664 0.68 0.773713
Target:  5'- gGCGGCGGGGgaGCGCGGAGcGCg--- -3'
miRNA:   3'- gCGCCGCUCCg-CGUGUUUCuUGacca -5'
29428 5' -56 NC_006151.1 + 11761 0.66 0.895933
Target:  5'- gGCGaGUGAGcGUGCGCGAAGGGg-GGa -3'
miRNA:   3'- gCGC-CGCUC-CGCGUGUUUCUUgaCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.