miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 5' -56 NC_006151.1 + 139657 0.66 0.889215
Target:  5'- uCGCGGCG-GGCGCGCcgcccGACaGGc -3'
miRNA:   3'- -GCGCCGCuCCGCGUGuuuc-UUGaCCa -5'
29428 5' -56 NC_006151.1 + 139532 0.68 0.783074
Target:  5'- gGCaGCGAGGCGUccaggucggggaGCGAGGAGC-GGc -3'
miRNA:   3'- gCGcCGCUCCGCG------------UGUUUCUUGaCCa -5'
29428 5' -56 NC_006151.1 + 139194 0.7 0.674591
Target:  5'- gGCGGuCGGGGCGCugGAGcucCUGGc -3'
miRNA:   3'- gCGCC-GCUCCGCGugUUUcuuGACCa -5'
29428 5' -56 NC_006151.1 + 138627 0.68 0.792297
Target:  5'- aCGCcGCcgGGGGCGCGCc--GGACUGGg -3'
miRNA:   3'- -GCGcCG--CUCCGCGUGuuuCUUGACCa -5'
29428 5' -56 NC_006151.1 + 137762 0.66 0.889215
Target:  5'- cCGCGGCcuGGCGCGCGugcuccagcAGGccgugcuGCUGGa -3'
miRNA:   3'- -GCGCCGcuCCGCGUGU---------UUCu------UGACCa -5'
29428 5' -56 NC_006151.1 + 137137 0.66 0.902417
Target:  5'- gCGCGGCGcgacgcGGCGC-CGGAGA--UGGc -3'
miRNA:   3'- -GCGCCGCu-----CCGCGuGUUUCUugACCa -5'
29428 5' -56 NC_006151.1 + 136993 0.77 0.328272
Target:  5'- gGCGGCGGGcGCGCGCGcacGGcGCUGGg -3'
miRNA:   3'- gCGCCGCUC-CGCGUGUu--UCuUGACCa -5'
29428 5' -56 NC_006151.1 + 136638 0.66 0.882268
Target:  5'- cCGCGGCGcccgugGGGCGCucgccccuCGGGGAGCgcgcGGc -3'
miRNA:   3'- -GCGCCGC------UCCGCGu-------GUUUCUUGa---CCa -5'
29428 5' -56 NC_006151.1 + 135110 0.75 0.4182
Target:  5'- gGCGGCGGuaGCGCGCGGGGcgGGCUGGg -3'
miRNA:   3'- gCGCCGCUc-CGCGUGUUUC--UUGACCa -5'
29428 5' -56 NC_006151.1 + 134258 0.67 0.860093
Target:  5'- uCGCGGCGAGGUGCAgGc--GAUUGu- -3'
miRNA:   3'- -GCGCCGCUCCGCGUgUuucUUGACca -5'
29428 5' -56 NC_006151.1 + 134029 0.66 0.887844
Target:  5'- gCGCGGCGAcGaGCGUcagcgagagcccgGCGGAGGAgaccaucCUGGUg -3'
miRNA:   3'- -GCGCCGCU-C-CGCG-------------UGUUUCUU-------GACCA- -5'
29428 5' -56 NC_006151.1 + 133502 0.71 0.643748
Target:  5'- gGCGGCGcgggGGGCGCGgGAGGAGCc--- -3'
miRNA:   3'- gCGCCGC----UCCGCGUgUUUCUUGacca -5'
29428 5' -56 NC_006151.1 + 133316 0.67 0.826785
Target:  5'- gGCGGCccgugucGAGGCGCGCcGGGcGGCcGGUu -3'
miRNA:   3'- gCGCCG-------CUCCGCGUGuUUC-UUGaCCA- -5'
29428 5' -56 NC_006151.1 + 132338 0.66 0.875095
Target:  5'- cCGUGGCcacguacAGGUGCAgGAAGAGCcagGGg -3'
miRNA:   3'- -GCGCCGc------UCCGCGUgUUUCUUGa--CCa -5'
29428 5' -56 NC_006151.1 + 132042 0.66 0.902417
Target:  5'- gGCGGCGcgcGGCaGCGCGgcgGAGAACggcGGc -3'
miRNA:   3'- gCGCCGCu--CCG-CGUGU---UUCUUGa--CCa -5'
29428 5' -56 NC_006151.1 + 131872 0.66 0.867701
Target:  5'- gGCGGCGucgggucgcaGGGCaGCACGgccGAGGGCgacgGGg -3'
miRNA:   3'- gCGCCGC----------UCCG-CGUGU---UUCUUGa---CCa -5'
29428 5' -56 NC_006151.1 + 130945 0.72 0.59226
Target:  5'- gGCGGCGGGGgguCGCGCGggcgcGGGGGCcGGUa -3'
miRNA:   3'- gCGCCGCUCC---GCGUGU-----UUCUUGaCCA- -5'
29428 5' -56 NC_006151.1 + 130413 0.68 0.819051
Target:  5'- cCGCGaGCGcGGGCGCGCcgaccgucGAGGACUGc- -3'
miRNA:   3'- -GCGC-CGC-UCCGCGUGu-------UUCUUGACca -5'
29428 5' -56 NC_006151.1 + 129445 0.71 0.612819
Target:  5'- aGUgGGCGGGGCGCACGGccguGGGCgGGa -3'
miRNA:   3'- gCG-CCGCUCCGCGUGUUu---CUUGaCCa -5'
29428 5' -56 NC_006151.1 + 129285 0.66 0.867701
Target:  5'- gCGCGGCGcguuccucGGGCGCGgc-GGAGCaUGGc -3'
miRNA:   3'- -GCGCCGC--------UCCGCGUguuUCUUG-ACCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.