miRNA display CGI


Results 41 - 60 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 129739 0.66 0.852083
Target:  5'- cGGGCccgcgaGGCGCUGCAGcACcaGCGCGa -3'
miRNA:   3'- aCCCGuag---UCGCGGUGUU-UGa-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 69330 0.66 0.852083
Target:  5'- nGGGCG-CGuCGCCGCccGCgaGCGCGg -3'
miRNA:   3'- aCCCGUaGUcGCGGUGuuUGa-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 139299 0.66 0.852083
Target:  5'- -cGGCGUCuGCGgCGCGuGCUGCuCGa -3'
miRNA:   3'- acCCGUAGuCGCgGUGUuUGACGcGC- -5'
29429 3' -56.4 NC_006151.1 + 94735 0.66 0.852083
Target:  5'- -cGGCGUCccGGCGCgCGC--ACUcGCGCGg -3'
miRNA:   3'- acCCGUAG--UCGCG-GUGuuUGA-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 83056 0.66 0.852083
Target:  5'- aGcGGCAgCAGCuugGCCACGAGC-GCGUc -3'
miRNA:   3'- aC-CCGUaGUCG---CGGUGUUUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 106471 0.66 0.851286
Target:  5'- gUGGGCGcccUgGGCGCaCACGgagacgggccagcGGCUgGCGCGc -3'
miRNA:   3'- -ACCCGU---AgUCGCG-GUGU-------------UUGA-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 141508 0.66 0.849686
Target:  5'- cGGGCGUCuccacgggggccgaGGCGacggacgugaGCGAgcuGCUGCGCGa -3'
miRNA:   3'- aCCCGUAG--------------UCGCgg--------UGUU---UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 139938 0.66 0.847271
Target:  5'- gUGGGCcgccguccucgaguUCGGCGCCGagcaguucacccCGGACgggcgGCGCGu -3'
miRNA:   3'- -ACCCGu-------------AGUCGCGGU------------GUUUGa----CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 3081 0.66 0.844023
Target:  5'- gUGGGCGaaggcggcgagCAGCGCCGagAGGCcgccgcgGCGCGg -3'
miRNA:   3'- -ACCCGUa----------GUCGCGGUg-UUUGa------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 67486 0.66 0.844023
Target:  5'- cGGGCAcc--CGCaCACGAGC-GCGCGg -3'
miRNA:   3'- aCCCGUagucGCG-GUGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 137140 0.66 0.844023
Target:  5'- cGGcGCGacgCGGCGCCGgAGAUggccGCGCa -3'
miRNA:   3'- aCC-CGUa--GUCGCGGUgUUUGa---CGCGc -5'
29429 3' -56.4 NC_006151.1 + 68524 0.66 0.844023
Target:  5'- cGGGCAgcaccacCAGCGCgCGCAggUccCGCGa -3'
miRNA:   3'- aCCCGUa------GUCGCG-GUGUuuGacGCGC- -5'
29429 3' -56.4 NC_006151.1 + 105532 0.66 0.844023
Target:  5'- cGGcgcGCAUCGG-GCC-CGAGCUGCgGCa -3'
miRNA:   3'- aCC---CGUAGUCgCGGuGUUUGACG-CGc -5'
29429 3' -56.4 NC_006151.1 + 66862 0.67 0.835766
Target:  5'- aGGGCcggGGCGgCGCGAAggGCGCGc -3'
miRNA:   3'- aCCCGuagUCGCgGUGUUUgaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 30336 0.67 0.835766
Target:  5'- gGaGGCggCGGCGgCGCGAGg-GCGCGa -3'
miRNA:   3'- aC-CCGuaGUCGCgGUGUUUgaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 76075 0.67 0.835766
Target:  5'- aGGGCGcCAGCaGCgACAGggGCgGCGCc -3'
miRNA:   3'- aCCCGUaGUCG-CGgUGUU--UGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 134335 0.67 0.835766
Target:  5'- cGGGCAU---CGCCACGGAC-GUGCc -3'
miRNA:   3'- aCCCGUAgucGCGGUGUUUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 68012 0.67 0.835766
Target:  5'- cGGGCucggCGGCGuCCAggucCAGGCggcccgccgGCGCGg -3'
miRNA:   3'- aCCCGua--GUCGC-GGU----GUUUGa--------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 90973 0.67 0.835766
Target:  5'- --cGCGUCgacgcccuGGCGCCGCuGGCUgGCGCGc -3'
miRNA:   3'- accCGUAG--------UCGCGGUGuUUGA-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 104032 0.67 0.835766
Target:  5'- gUGGaGCGcgcgCAGCGCCAgcucUggGCgcGCGCGg -3'
miRNA:   3'- -ACC-CGUa---GUCGCGGU----GuuUGa-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.