miRNA display CGI


Results 1 - 20 of 259 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 94898 1.08 0.002348
Target:  5'- gUGGGCAUCAGCGCCACAAACUGCGCGu -3'
miRNA:   3'- -ACCCGUAGUCGCGGUGUUUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 19892 0.91 0.036428
Target:  5'- aGGGCcagCAGCGCCAgGAGCUGCGCGg -3'
miRNA:   3'- aCCCGua-GUCGCGGUgUUUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 57091 0.82 0.133542
Target:  5'- aGGcGCAcgCAGCGCCGCGAGCaGCGCGc -3'
miRNA:   3'- aCC-CGUa-GUCGCGGUGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 99557 0.81 0.1561
Target:  5'- gUGGGCG-CGGCGCgCGCGGcgcuGCUGCGCGa -3'
miRNA:   3'- -ACCCGUaGUCGCG-GUGUU----UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 60107 0.81 0.164356
Target:  5'- cGGGCggCAGCGgCGCugGAACUGCGCGc -3'
miRNA:   3'- aCCCGuaGUCGCgGUG--UUUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 71011 0.81 0.164356
Target:  5'- gUGGGCGcCAuGCGCCGCGAgcucgcggaGCUGCGCGc -3'
miRNA:   3'- -ACCCGUaGU-CGCGGUGUU---------UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 100626 0.79 0.233792
Target:  5'- cUGGGaccugGUCAGCGCCGC--GCUGCGCc -3'
miRNA:   3'- -ACCCg----UAGUCGCGGUGuuUGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 56941 0.78 0.257732
Target:  5'- gGGGCGucgccggcgcUCAGCGCCuCGAGC-GCGCGg -3'
miRNA:   3'- aCCCGU----------AGUCGCGGuGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 57289 0.77 0.276976
Target:  5'- aGGGCGUcCAGCGCgGCcuuGGCgGCGCGg -3'
miRNA:   3'- aCCCGUA-GUCGCGgUGu--UUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 69306 0.77 0.283641
Target:  5'- cGGGCcgcCGGCGCCACAcg-UGCGCGg -3'
miRNA:   3'- aCCCGua-GUCGCGGUGUuugACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 53669 0.77 0.29735
Target:  5'- gGGGCAcgcguagcugUAGCGCC-CGAGCUGCGCc -3'
miRNA:   3'- aCCCGUa---------GUCGCGGuGUUUGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 76882 0.77 0.304394
Target:  5'- aGGaGCccCAGCGCCGCcuGCUGCGCc -3'
miRNA:   3'- aCC-CGuaGUCGCGGUGuuUGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 101288 0.76 0.318867
Target:  5'- aGGGCGcgggCGGCGCCGCGcugcACUGCGUc -3'
miRNA:   3'- aCCCGUa---GUCGCGGUGUu---UGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 119612 0.75 0.360488
Target:  5'- aUGGGCGUCuucgggaccaugaacAGCGCCuACAgcGACUGCGaCGu -3'
miRNA:   3'- -ACCCGUAG---------------UCGCGG-UGU--UUGACGC-GC- -5'
29429 3' -56.4 NC_006151.1 + 20136 0.75 0.36534
Target:  5'- gGGGCG--GGCGCCGCGggGGCgGCGCGu -3'
miRNA:   3'- aCCCGUagUCGCGGUGU--UUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 53345 0.75 0.373526
Target:  5'- gGGGCGcgCGcGCGCCGCGuACUGCGUc -3'
miRNA:   3'- aCCCGUa-GU-CGCGGUGUuUGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 57980 0.75 0.390268
Target:  5'- gUGGGCggCGagcGCGCCGCGGACcgccuccgGCGCGg -3'
miRNA:   3'- -ACCCGuaGU---CGCGGUGUUUGa-------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 58421 0.75 0.397961
Target:  5'- cUGGGCGUgCGGCaGCCACGccucgguGGCgUGCGCGc -3'
miRNA:   3'- -ACCCGUA-GUCG-CGGUGU-------UUG-ACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 2346 0.75 0.398822
Target:  5'- cGGGCuccagCAGCGCCGCGGcGCagaagGCGCGc -3'
miRNA:   3'- aCCCGua---GUCGCGGUGUU-UGa----CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 111047 0.75 0.398822
Target:  5'- cGGGCAg-GGCGCCcuCGAGCgucUGCGCGg -3'
miRNA:   3'- aCCCGUagUCGCGGu-GUUUG---ACGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.