miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 2212 0.66 0.859938
Target:  5'- gUGGGUcuccaCGGCGCCcCcGGCggcgGCGCGg -3'
miRNA:   3'- -ACCCGua---GUCGCGGuGuUUGa---CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 2346 0.75 0.398822
Target:  5'- cGGGCuccagCAGCGCCGCGGcGCagaagGCGCGc -3'
miRNA:   3'- aCCCGua---GUCGCGGUGUU-UGa----CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 2799 0.68 0.773119
Target:  5'- cGGGC--CAGCGCacgGCGcACUGgGCGg -3'
miRNA:   3'- aCCCGuaGUCGCGg--UGUuUGACgCGC- -5'
29429 3' -56.4 NC_006151.1 + 3081 0.66 0.844023
Target:  5'- gUGGGCGaaggcggcgagCAGCGCCGagAGGCcgccgcgGCGCGg -3'
miRNA:   3'- -ACCCGUa----------GUCGCGGUg-UUUGa------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 3135 0.68 0.744156
Target:  5'- cGGGCGcggGGCGCCcucgGCGGGCUcgGCGCa -3'
miRNA:   3'- aCCCGUag-UCGCGG----UGUUUGA--CGCGc -5'
29429 3' -56.4 NC_006151.1 + 3218 0.67 0.80989
Target:  5'- cGGG-GUCGGCuaucuGCCGCAuccaGGCgGCGCGg -3'
miRNA:   3'- aCCCgUAGUCG-----CGGUGU----UUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 3262 0.72 0.510021
Target:  5'- gGGGCGccgCGGCGCgCgGCGAugUGCGCc -3'
miRNA:   3'- aCCCGUa--GUCGCG-G-UGUUugACGCGc -5'
29429 3' -56.4 NC_006151.1 + 3681 0.67 0.818691
Target:  5'- gGGGCggCGG-GCCcCGGGC-GCGCGg -3'
miRNA:   3'- aCCCGuaGUCgCGGuGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 3950 0.67 0.82732
Target:  5'- cGGGCuccgCGG-GCC-CGGGCcGCGCGg -3'
miRNA:   3'- aCCCGua--GUCgCGGuGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 4020 0.67 0.818691
Target:  5'- aGGGCcgCGGCGUaggucCAGGCggccucgcggGCGCGg -3'
miRNA:   3'- aCCCGuaGUCGCGgu---GUUUGa---------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 4153 0.68 0.773119
Target:  5'- cGGGgAUC-GCGUCGCGGA--GCGCGa -3'
miRNA:   3'- aCCCgUAGuCGCGGUGUUUgaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 4215 0.66 0.867583
Target:  5'- aGGGCGgcCGGgG-CGCGGGCggGCGCGg -3'
miRNA:   3'- aCCCGUa-GUCgCgGUGUUUGa-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 4318 0.7 0.642524
Target:  5'- gGGGCAc--GCGgC-CGGGCUGCGCGg -3'
miRNA:   3'- aCCCGUaguCGCgGuGUUUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 4340 0.66 0.867583
Target:  5'- gGcGGCGaaGGCGgCGCGGACgcggGCGCa -3'
miRNA:   3'- aC-CCGUagUCGCgGUGUUUGa---CGCGc -5'
29429 3' -56.4 NC_006151.1 + 5079 0.71 0.601132
Target:  5'- aGGGCcgCGGgGCCGCGGcggGCGCc -3'
miRNA:   3'- aCCCGuaGUCgCGGUGUUugaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 6227 0.66 0.859938
Target:  5'- aGGaGCcgCGGCGCCGgGAgcccugGCUGcCGCc -3'
miRNA:   3'- aCC-CGuaGUCGCGGUgUU------UGAC-GCGc -5'
29429 3' -56.4 NC_006151.1 + 8336 0.67 0.791799
Target:  5'- cGGGCcUCGaucGCGCCcgcCGGACgcggagGCGCGa -3'
miRNA:   3'- aCCCGuAGU---CGCGGu--GUUUGa-----CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 10924 0.67 0.800923
Target:  5'- cGGGCccaCGGCGCCGagggUggGC-GCGCGu -3'
miRNA:   3'- aCCCGua-GUCGCGGU----GuuUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 13196 0.67 0.804529
Target:  5'- gGGGCccgCGGCGCCGcCAAcucgagucuuggcacGCUGCcaGCGu -3'
miRNA:   3'- aCCCGua-GUCGCGGU-GUU---------------UGACG--CGC- -5'
29429 3' -56.4 NC_006151.1 + 15057 0.74 0.434204
Target:  5'- gGGGCccCGGCGCCuu---CUGCGCGg -3'
miRNA:   3'- aCCCGuaGUCGCGGuguuuGACGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.