miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 64478 0.74 0.289512
Target:  5'- cGCCGcgGCggggacgcCCGCGGgcgcgggcgGCGGGCGCGCGc -3'
miRNA:   3'- -CGGCa-CGa-------GGCGCUa--------CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 130405 0.74 0.296126
Target:  5'- cGCCucGC-CCGCGAgcGCGGGCGCGCc -3'
miRNA:   3'- -CGGcaCGaGGCGCUa-CGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 139076 0.74 0.296126
Target:  5'- aGCuCGgGCUCCGCc-UGgGGGCGCGCAu -3'
miRNA:   3'- -CG-GCaCGAGGCGcuACgCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 136826 0.74 0.302857
Target:  5'- cGCCGcgcggGCUCUGCGAcGCGGccgccggccucGCGCGCc -3'
miRNA:   3'- -CGGCa----CGAGGCGCUaCGCC-----------UGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 71210 0.74 0.302857
Target:  5'- aGCuCGUG-UCCGUGAccGUGGGCGCGCGc -3'
miRNA:   3'- -CG-GCACgAGGCGCUa-CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 76628 0.73 0.309705
Target:  5'- gGCCGggcGCUCCaucgugugGCGAcgaccgcgUGCGGGCGCGUg -3'
miRNA:   3'- -CGGCa--CGAGG--------CGCU--------ACGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 113037 0.73 0.309705
Target:  5'- cGCCGggUGCUgCGCGGcgGCGGA-GCGCGa -3'
miRNA:   3'- -CGGC--ACGAgGCGCUa-CGCCUgCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 113503 0.73 0.316671
Target:  5'- cCCGUGCUCgagggcuuCGUG--GCGGACGCGCGc -3'
miRNA:   3'- cGGCACGAG--------GCGCuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 119021 0.73 0.316671
Target:  5'- cCCGUGCUCUcCGAgGCGGGCGC-CAa -3'
miRNA:   3'- cGGCACGAGGcGCUaCGCCUGCGcGU- -5'
29429 5' -60.5 NC_006151.1 + 97405 0.73 0.316671
Target:  5'- uGCCGUGgaUCGCGuUGUcGACGCGCGu -3'
miRNA:   3'- -CGGCACgaGGCGCuACGcCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 114314 0.73 0.323754
Target:  5'- -aCGUGCUgCGCGAcgggggccUGCGcGACGUGCGc -3'
miRNA:   3'- cgGCACGAgGCGCU--------ACGC-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 98336 0.73 0.323754
Target:  5'- gGCCGcGggCCGCGAgacgcccGCGGGCGUGCGc -3'
miRNA:   3'- -CGGCaCgaGGCGCUa------CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 121184 0.73 0.330955
Target:  5'- gGCCGUGCUgcaCGCGcucgGGGCGCGCAc -3'
miRNA:   3'- -CGGCACGAg--GCGCuacgCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 20750 0.73 0.330955
Target:  5'- aGCCGgcgcGcCUCCacCGcgGCGGACGCGCGc -3'
miRNA:   3'- -CGGCa---C-GAGGc-GCuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 55416 0.73 0.338272
Target:  5'- gGCCcUGCgcgCCGCGcagGCGGGCGCGg- -3'
miRNA:   3'- -CGGcACGa--GGCGCua-CGCCUGCGCgu -5'
29429 5' -60.5 NC_006151.1 + 77924 0.72 0.353258
Target:  5'- gGCCGUGg-UgGUGAaggGCGGGCGCGCGg -3'
miRNA:   3'- -CGGCACgaGgCGCUa--CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 139815 0.72 0.353258
Target:  5'- cGCCGU-CUCCGCGAcGC--ACGCGCGg -3'
miRNA:   3'- -CGGCAcGAGGCGCUaCGccUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 123903 0.72 0.353258
Target:  5'- cGCCGUGCggcgcggcggCCGUGAcGCGGGC-CGCc -3'
miRNA:   3'- -CGGCACGa---------GGCGCUaCGCCUGcGCGu -5'
29429 5' -60.5 NC_006151.1 + 115554 0.72 0.353258
Target:  5'- cGgCGUacucGC-CCGCGG-GCGGGCGCGCGg -3'
miRNA:   3'- -CgGCA----CGaGGCGCUaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 86560 0.72 0.375809
Target:  5'- cGCCGUuccggcaGCUCU-CGgcGCGGGCGCGCu -3'
miRNA:   3'- -CGGCA-------CGAGGcGCuaCGCCUGCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.