miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 94932 1.1 0.000925
Target:  5'- cGCCGUGCUCCGCGAUGCGGACGCGCAg -3'
miRNA:   3'- -CGGCACGAGGCGCUACGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 99304 0.8 0.127597
Target:  5'- cGCCGUGCUggaCCGCGcgccccgccUGaCGGACGCGCAg -3'
miRNA:   3'- -CGGCACGA---GGCGCu--------AC-GCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 69122 0.78 0.159742
Target:  5'- cGCCGcGcCUCCGCGG-GCaGGGCGCGCGg -3'
miRNA:   3'- -CGGCaC-GAGGCGCUaCG-CCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 104800 0.77 0.176254
Target:  5'- cGCuCGUGCgCCGCGAccugGCGGcgGCGCGCGa -3'
miRNA:   3'- -CG-GCACGaGGCGCUa---CGCC--UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 83350 0.77 0.180613
Target:  5'- -aCGUGCUCCccggcGCGcgcGCGGGCGCGCAg -3'
miRNA:   3'- cgGCACGAGG-----CGCua-CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 27212 0.77 0.185067
Target:  5'- cGCCGggGCcCCGCGcgccGUGGACGCGCAc -3'
miRNA:   3'- -CGGCa-CGaGGCGCua--CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 136980 0.77 0.194267
Target:  5'- gGCCGccGCgCCGgGcgGCGGGCGCGCGc -3'
miRNA:   3'- -CGGCa-CGaGGCgCuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 51988 0.76 0.213871
Target:  5'- aGCa--GCUCCGCGGUGCcGGCGUGCAg -3'
miRNA:   3'- -CGgcaCGAGGCGCUACGcCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 37950 0.76 0.21903
Target:  5'- gGCCGcgUGCcCCGCGAgcugGCGGACGCcuGCGu -3'
miRNA:   3'- -CGGC--ACGaGGCGCUa---CGCCUGCG--CGU- -5'
29429 5' -60.5 NC_006151.1 + 3941 0.76 0.224296
Target:  5'- gGCCGggcgcggGCUCCGCGGgccCGGGcCGCGCGg -3'
miRNA:   3'- -CGGCa------CGAGGCGCUac-GCCU-GCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 104004 0.75 0.24644
Target:  5'- gGCCGUggagGCgcgCCGCGcgGCGGagguggagcGCGCGCAg -3'
miRNA:   3'- -CGGCA----CGa--GGCGCuaCGCC---------UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 104460 0.75 0.24644
Target:  5'- cGCCGUggGCUUCGuCGggGCGGACaugGCGCAc -3'
miRNA:   3'- -CGGCA--CGAGGC-GCuaCGCCUG---CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 56564 0.75 0.251666
Target:  5'- uGCCGgGCgacgcgCCGCcgcccgacgggcuGGUGCGGACGCGCc -3'
miRNA:   3'- -CGGCaCGa-----GGCG-------------CUACGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 112838 0.75 0.264214
Target:  5'- cGCgCGUGCUCaCGCuc-GUGGACGUGCAg -3'
miRNA:   3'- -CG-GCACGAG-GCGcuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 81554 0.74 0.270365
Target:  5'- cGCgGUGCacauggCCGUGGUGCGGagcagggucucGCGCGCGu -3'
miRNA:   3'- -CGgCACGa-----GGCGCUACGCC-----------UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 31749 0.74 0.270365
Target:  5'- cGCCGgggacgcGC-CUGCGGcgGCGGGCGCGCGc -3'
miRNA:   3'- -CGGCa------CGaGGCGCUa-CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 118757 0.74 0.272858
Target:  5'- gGCCGUGC-CaCGCGcGUGCGGaaccuggacgcggugGCGCGCGg -3'
miRNA:   3'- -CGGCACGaG-GCGC-UACGCC---------------UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 104886 0.74 0.283013
Target:  5'- cGCC-UGCUgCGCGAggugGUGGACGCgGCGg -3'
miRNA:   3'- -CGGcACGAgGCGCUa---CGCCUGCG-CGU- -5'
29429 5' -60.5 NC_006151.1 + 76797 0.74 0.283013
Target:  5'- cGCCGUacagcGCcCCgGCGAggGCGGGCGCGUAg -3'
miRNA:   3'- -CGGCA-----CGaGG-CGCUa-CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 133343 0.74 0.283013
Target:  5'- gGCCG-GUUCCGCGGcgGCGGugGUGg- -3'
miRNA:   3'- -CGGCaCGAGGCGCUa-CGCCugCGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.