miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 664 0.71 0.443726
Target:  5'- gGCCGgggcggGCUCCGCGGaucGCaucGGCGCGCc -3'
miRNA:   3'- -CGGCa-----CGAGGCGCUa--CGc--CUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 2343 0.67 0.624521
Target:  5'- cGUCGgGCUCCagcaGCGccGCGGcgcagaagGCGCGCAa -3'
miRNA:   3'- -CGGCaCGAGG----CGCuaCGCC--------UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 3941 0.76 0.224296
Target:  5'- gGCCGggcgcggGCUCCGCGGgccCGGGcCGCGCGg -3'
miRNA:   3'- -CGGCa------CGAGGCGCUac-GCCU-GCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 4327 0.68 0.56138
Target:  5'- gGCCGgGCUgCGCGGcggcgaaggcggcGCGGACGCGg- -3'
miRNA:   3'- -CGGCaCGAgGCGCUa------------CGCCUGCGCgu -5'
29429 5' -60.5 NC_006151.1 + 4603 0.66 0.722833
Target:  5'- aGCCGUGg-CCGUGGggcgcGUGGACccgGCGCu -3'
miRNA:   3'- -CGGCACgaGGCGCUa----CGCCUG---CGCGu -5'
29429 5' -60.5 NC_006151.1 + 4801 0.67 0.654301
Target:  5'- cGCgGUaGCgggCCGCGGccugGCGGACGuCGUc -3'
miRNA:   3'- -CGgCA-CGa--GGCGCUa---CGCCUGC-GCGu -5'
29429 5' -60.5 NC_006151.1 + 4862 0.66 0.732396
Target:  5'- cCCG-GCgCCGCcGUaGCGGACGCGg- -3'
miRNA:   3'- cGGCaCGaGGCGcUA-CGCCUGCGCgu -5'
29429 5' -60.5 NC_006151.1 + 5074 0.68 0.604683
Target:  5'- gGCCGaGggCCGCGGggccgcgGCGGGCGCcgGCGg -3'
miRNA:   3'- -CGGCaCgaGGCGCUa------CGCCUGCG--CGU- -5'
29429 5' -60.5 NC_006151.1 + 5233 0.67 0.644381
Target:  5'- gGCCGaGCgCCGCGcgGCGG-CG-GCGg -3'
miRNA:   3'- -CGGCaCGaGGCGCuaCGCCuGCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 5690 0.66 0.683931
Target:  5'- cGCCGUGC-CgGCGcUGCGGccacCGCuGCu -3'
miRNA:   3'- -CGGCACGaGgCGCuACGCCu---GCG-CGu -5'
29429 5' -60.5 NC_006151.1 + 7976 0.68 0.604683
Target:  5'- gGCuCGUGUguccuUCCGCGGUaccuCGGGCGgGCGg -3'
miRNA:   3'- -CG-GCACG-----AGGCGCUAc---GCCUGCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 15919 0.66 0.693737
Target:  5'- cGCCGccGCcCCGUGAgGCGGGCcucgccccGCGCu -3'
miRNA:   3'- -CGGCa-CGaGGCGCUaCGCCUG--------CGCGu -5'
29429 5' -60.5 NC_006151.1 + 17112 0.68 0.584921
Target:  5'- cGCCGgggGCUCCggcgGCGGUGCugcgGGAgGCGg- -3'
miRNA:   3'- -CGGCa--CGAGG----CGCUACG----CCUgCGCgu -5'
29429 5' -60.5 NC_006151.1 + 17385 0.66 0.721872
Target:  5'- aCCGUG-UCCGCacgacggGgcGCGuGGCGCGCGg -3'
miRNA:   3'- cGGCACgAGGCG-------CuaCGC-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 19728 0.68 0.614596
Target:  5'- aGCCGaaGC-CCGCGcgGCGGuCGuCGCc -3'
miRNA:   3'- -CGGCa-CGaGGCGCuaCGCCuGC-GCGu -5'
29429 5' -60.5 NC_006151.1 + 20130 0.67 0.644381
Target:  5'- gGCUGggggGCgggcgCCGCGGggGCGG-CGCGUg -3'
miRNA:   3'- -CGGCa---CGa----GGCGCUa-CGCCuGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 20311 0.7 0.452582
Target:  5'- cGCCGUgGCguuggcggCgGCGA-GCaGGACGCGCGa -3'
miRNA:   3'- -CGGCA-CGa-------GgCGCUaCG-CCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 20750 0.73 0.330955
Target:  5'- aGCCGgcgcGcCUCCacCGcgGCGGACGCGCGc -3'
miRNA:   3'- -CGGCa---C-GAGGc-GCuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 21287 0.71 0.426311
Target:  5'- cGCgGUGCccgugCCGaCGAUcaccgaGCGGugGCGCGa -3'
miRNA:   3'- -CGgCACGa----GGC-GCUA------CGCCugCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 21351 0.68 0.614596
Target:  5'- gGCUGgaacgGCUCCGCGGgcUGCGGccACcCGCu -3'
miRNA:   3'- -CGGCa----CGAGGCGCU--ACGCC--UGcGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.