miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 22040 0.68 0.583936
Target:  5'- aGCagGUGCgcgcacccgUCCGCGAUGCGGuaccaggccacguGgGCGCGg -3'
miRNA:   3'- -CGg-CACG---------AGGCGCUACGCC-------------UgCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 22990 0.67 0.674084
Target:  5'- gGUCGUGaucucggCCGCGcggGUGGGgGCGCGg -3'
miRNA:   3'- -CGGCACga-----GGCGCua-CGCCUgCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 24597 0.67 0.664204
Target:  5'- cGCCuUGacgUCGCGAUGCauGAUGCGCAu -3'
miRNA:   3'- -CGGcACga-GGCGCUACGc-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 25113 0.66 0.732396
Target:  5'- -gCGUGCgagcgCUG-GgcGUGGACGCGCGa -3'
miRNA:   3'- cgGCACGa----GGCgCuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 27212 0.77 0.185067
Target:  5'- cGCCGggGCcCCGCGcgccGUGGACGCGCAc -3'
miRNA:   3'- -CGGCa-CGaGGCGCua--CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 28558 0.66 0.713196
Target:  5'- aGCCGUGC-CCGCGuccCGGGagccCGCAu -3'
miRNA:   3'- -CGGCACGaGGCGCuacGCCUgc--GCGU- -5'
29429 5' -60.5 NC_006151.1 + 31232 0.7 0.488932
Target:  5'- gGCCGgccgGC-CCgGCGAgcgaGCGGGCGgGCGa -3'
miRNA:   3'- -CGGCa---CGaGG-CGCUa---CGCCUGCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 31633 0.68 0.584921
Target:  5'- cGCCG-GCacgaGCGcacGCGGGCGCGCGg -3'
miRNA:   3'- -CGGCaCGagg-CGCua-CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 31749 0.74 0.270365
Target:  5'- cGCCGgggacgcGC-CUGCGGcgGCGGGCGCGCGc -3'
miRNA:   3'- -CGGCa------CGaGGCGCUa-CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 32780 0.66 0.693737
Target:  5'- cGCCGcGg-CCGCGGggggccgaaGCGGACGCGgAa -3'
miRNA:   3'- -CGGCaCgaGGCGCUa--------CGCCUGCGCgU- -5'
29429 5' -60.5 NC_006151.1 + 32955 0.7 0.488932
Target:  5'- uGCCGUGUUuuuuucCCGCGAcGgGGAgaGCGCGa -3'
miRNA:   3'- -CGGCACGA------GGCGCUaCgCCUg-CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 37950 0.76 0.21903
Target:  5'- gGCCGcgUGCcCCGCGAgcugGCGGACGCcuGCGu -3'
miRNA:   3'- -CGGC--ACGaGGCGCUa---CGCCUGCG--CGU- -5'
29429 5' -60.5 NC_006151.1 + 38294 0.66 0.722833
Target:  5'- cGCCGagGCcgCCGCGcgGCccGGGCcCGCGg -3'
miRNA:   3'- -CGGCa-CGa-GGCGCuaCG--CCUGcGCGU- -5'
29429 5' -60.5 NC_006151.1 + 39466 0.72 0.389473
Target:  5'- cGCCGUGCgcuggcccgggugCCGCGAgcuccgcGCGGcCGUGCu -3'
miRNA:   3'- -CGGCACGa------------GGCGCUa------CGCCuGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 39862 0.69 0.516119
Target:  5'- cGCCGaGCUCCGCGGccccgagggccUGCcGGccgaguuGCGCGCc -3'
miRNA:   3'- -CGGCaCGAGGCGCU-----------ACG-CC-------UGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 40221 0.68 0.598744
Target:  5'- cGCCGgcaaccccuaccugcUGCUCCGCuGA-GCGGG-GCGCc -3'
miRNA:   3'- -CGGC---------------ACGAGGCG-CUaCGCCUgCGCGu -5'
29429 5' -60.5 NC_006151.1 + 44573 0.71 0.426311
Target:  5'- uGCCGaggaGCUCCGCugcaGcgGCGGACGCa-- -3'
miRNA:   3'- -CGGCa---CGAGGCG----CuaCGCCUGCGcgu -5'
29429 5' -60.5 NC_006151.1 + 45423 0.66 0.713196
Target:  5'- uGuuGUGggCCGgGGguucGCGGGCGuCGCAc -3'
miRNA:   3'- -CggCACgaGGCgCUa---CGCCUGC-GCGU- -5'
29429 5' -60.5 NC_006151.1 + 47751 0.69 0.507614
Target:  5'- aGCCG-GaCUUugCGCGAUGCGGcgauCGCGCc -3'
miRNA:   3'- -CGGCaC-GAG--GCGCUACGCCu---GCGCGu -5'
29429 5' -60.5 NC_006151.1 + 49621 0.67 0.654301
Target:  5'- gGCgGUGCUgCGCGAguggggGUGGGC-CGUg -3'
miRNA:   3'- -CGgCACGAgGCGCUa-----CGCCUGcGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.