miRNA display CGI


Results 41 - 60 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29430 3' -64.1 NC_006151.1 + 78582 0.67 0.475686
Target:  5'- gCGaCGGGCcu-GGAGCUGGCGG-UCa- -3'
miRNA:   3'- -GC-GCCCGcuuCCUCGACCGCCcGGac -5'
29430 3' -64.1 NC_006151.1 + 30176 0.67 0.466732
Target:  5'- gGCGGGUGAgagAGGucgGGgaGGCcgGGGCCg- -3'
miRNA:   3'- gCGCCCGCU---UCC---UCgaCCG--CCCGGac -5'
29430 3' -64.1 NC_006151.1 + 22515 0.67 0.466732
Target:  5'- gGgGGaaucGCGggGGAGUcgGGCGgGGCCg- -3'
miRNA:   3'- gCgCC----CGCuuCCUCGa-CCGC-CCGGac -5'
29430 3' -64.1 NC_006151.1 + 18212 0.67 0.466732
Target:  5'- aGCgGGGCGGgcauucaacAGGcGGCUGGCGGucacGCCa- -3'
miRNA:   3'- gCG-CCCGCU---------UCC-UCGACCGCC----CGGac -5'
29430 3' -64.1 NC_006151.1 + 3132 0.67 0.466732
Target:  5'- gGcCGGGCGc-GGGGCgcccucGGCGGGCUc- -3'
miRNA:   3'- gC-GCCCGCuuCCUCGa-----CCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 57154 0.67 0.457865
Target:  5'- gCGgGGGCGAGGGcGUcccccGGCGcGGCCc- -3'
miRNA:   3'- -GCgCCCGCUUCCuCGa----CCGC-CCGGac -5'
29430 3' -64.1 NC_006151.1 + 50650 0.67 0.457865
Target:  5'- cCGCGGGCGGAcccGAGUcGuGCGcGGCCg- -3'
miRNA:   3'- -GCGCCCGCUUc--CUCGaC-CGC-CCGGac -5'
29430 3' -64.1 NC_006151.1 + 119035 0.67 0.457865
Target:  5'- gGCGGGCGccAAGGAc--GGCGGcGCCg- -3'
miRNA:   3'- gCGCCCGC--UUCCUcgaCCGCC-CGGac -5'
29430 3' -64.1 NC_006151.1 + 98356 0.67 0.455223
Target:  5'- cCGCGGGCGugcGcGGGCUcugGGCGcgcgcgcugcgccuGGCCUGc -3'
miRNA:   3'- -GCGCCCGCuu-C-CUCGA---CCGC--------------CCGGAC- -5'
29430 3' -64.1 NC_006151.1 + 22079 0.67 0.449089
Target:  5'- aCGUGGGCGcgguacguGGGccGCcGGUGGGCCa- -3'
miRNA:   3'- -GCGCCCGCu-------UCCu-CGaCCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 79152 0.67 0.449089
Target:  5'- uCGCGGGaGAAGGGGgUGagcgaGCGGGCa-- -3'
miRNA:   3'- -GCGCCCgCUUCCUCgAC-----CGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 123482 0.67 0.446475
Target:  5'- aCGUGGGCcuccugccgcaccuGAaggAGGAGCUGGCGcGCUUc -3'
miRNA:   3'- -GCGCCCG--------------CU---UCCUCGACCGCcCGGAc -5'
29430 3' -64.1 NC_006151.1 + 21333 0.68 0.431822
Target:  5'- gGCGcGGCGggGGuccgcGGCUGgaacggcuccGCGGGCUg- -3'
miRNA:   3'- gCGC-CCGCuuCC-----UCGAC----------CGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 30640 0.68 0.431822
Target:  5'- gGUGGGUGggGGAGggGGUugauGGCCg- -3'
miRNA:   3'- gCGCCCGCuuCCUCgaCCGc---CCGGac -5'
29430 3' -64.1 NC_006151.1 + 71978 0.68 0.431822
Target:  5'- gGUGcGGCGggGGcAGCUGGUagcgccGGCCg- -3'
miRNA:   3'- gCGC-CCGCuuCC-UCGACCGc-----CCGGac -5'
29430 3' -64.1 NC_006151.1 + 122392 0.68 0.431822
Target:  5'- cCGCGGGCGc--GcGCUGGCGGcGCUc- -3'
miRNA:   3'- -GCGCCCGCuucCuCGACCGCC-CGGac -5'
29430 3' -64.1 NC_006151.1 + 67451 0.68 0.430969
Target:  5'- gCGCGGGCGggGGGGUcgcaGagcgcgcgcagcaGCGGGCa-- -3'
miRNA:   3'- -GCGCCCGCuuCCUCGa---C-------------CGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 134994 0.68 0.423335
Target:  5'- gGCGGGCGcgucuuggcGGGGGCgcgGGgGGGCa-- -3'
miRNA:   3'- gCGCCCGCu--------UCCUCGa--CCgCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 89174 0.68 0.423335
Target:  5'- gGCGGGCGcGGGGGUcGG-GGGCg-- -3'
miRNA:   3'- gCGCCCGCuUCCUCGaCCgCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 131900 0.68 0.414949
Target:  5'- cCGaGGGCGAcGGGGGC-GGCagcaGGGCCUc -3'
miRNA:   3'- -GCgCCCGCU-UCCUCGaCCG----CCCGGAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.