miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29430 3' -64.1 NC_006151.1 + 93576 0.66 0.52072
Target:  5'- gGCGGGCGcgccaaaGAGcGGGCUcGCGccgauGGCCUGc -3'
miRNA:   3'- gCGCCCGC-------UUC-CUCGAcCGC-----CCGGAC- -5'
29430 3' -64.1 NC_006151.1 + 53943 0.66 0.518848
Target:  5'- cCGC-GGCGAGGGAcuugaaccacgccaGCggcGGCGGcGCCUc -3'
miRNA:   3'- -GCGcCCGCUUCCU--------------CGa--CCGCC-CGGAc -5'
29430 3' -64.1 NC_006151.1 + 133486 0.66 0.516044
Target:  5'- cCGCGGGCGucaccuuggcggcgcGGGGGGCgcgGGaGGaGCCg- -3'
miRNA:   3'- -GCGCCCGC---------------UUCCUCGa--CCgCC-CGGac -5'
29430 3' -64.1 NC_006151.1 + 10978 0.66 0.512316
Target:  5'- gGUGGGUGucacgguGGAGCgGGCcggGGGCCc- -3'
miRNA:   3'- gCGCCCGCuu-----CCUCGaCCG---CCCGGac -5'
29430 3' -64.1 NC_006151.1 + 96712 0.66 0.503044
Target:  5'- cCGgGGGCGGcggcggacgAGGAgGC-GGCGGGCg-- -3'
miRNA:   3'- -GCgCCCGCU---------UCCU-CGaCCGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 89743 0.66 0.503044
Target:  5'- gGUGGGCGAGacGAGCUGGUugccGcGGCCc- -3'
miRNA:   3'- gCGCCCGCUUc-CUCGACCG----C-CCGGac -5'
29430 3' -64.1 NC_006151.1 + 139642 0.66 0.503044
Target:  5'- gCGCcGGCGcGGGGGUcgcGGCGGGCg-- -3'
miRNA:   3'- -GCGcCCGCuUCCUCGa--CCGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 61469 0.66 0.503044
Target:  5'- uGCGGGCcgcgcaacgccGAGGccguGAGCUGGCGcuCCUGg -3'
miRNA:   3'- gCGCCCG-----------CUUC----CUCGACCGCccGGAC- -5'
29430 3' -64.1 NC_006151.1 + 31240 0.66 0.503044
Target:  5'- gGCccGGCGAGcGAGCgGGCGGGCgaGc -3'
miRNA:   3'- gCGc-CCGCUUcCUCGaCCGCCCGgaC- -5'
29430 3' -64.1 NC_006151.1 + 2537 0.66 0.493845
Target:  5'- aGC--GCGGAGc-GCUGGCGGGCCa- -3'
miRNA:   3'- gCGccCGCUUCcuCGACCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 29470 0.66 0.493845
Target:  5'- aGCGGGCGcgccGGGAGaggaaagGGCGcgcuGGCCUc -3'
miRNA:   3'- gCGCCCGCu---UCCUCga-----CCGC----CCGGAc -5'
29430 3' -64.1 NC_006151.1 + 105010 0.66 0.493845
Target:  5'- cCGCcuccGCGGAGGAGCUGGUGacgcaggcGGCgCUGc -3'
miRNA:   3'- -GCGcc--CGCUUCCUCGACCGC--------CCG-GAC- -5'
29430 3' -64.1 NC_006151.1 + 33132 0.67 0.484725
Target:  5'- cCGCGGGcCGAgugucgGGcGAGUgcgaGGCGGGUCg- -3'
miRNA:   3'- -GCGCCC-GCU------UC-CUCGa---CCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 33236 0.67 0.484725
Target:  5'- gGCGGGCGGgaggggguccGGGGGaagGGUGGGgCg- -3'
miRNA:   3'- gCGCCCGCU----------UCCUCga-CCGCCCgGac -5'
29430 3' -64.1 NC_006151.1 + 86580 0.67 0.484725
Target:  5'- gCGCGGGCGcgcuccGAGcuGCUGGCGcGcGCCg- -3'
miRNA:   3'- -GCGCCCGC------UUCcuCGACCGC-C-CGGac -5'
29430 3' -64.1 NC_006151.1 + 27321 0.67 0.484725
Target:  5'- gGCGGGgGAcgGGGGGCUGcucccCGGGaCCg- -3'
miRNA:   3'- gCGCCCgCU--UCCUCGACc----GCCC-GGac -5'
29430 3' -64.1 NC_006151.1 + 127287 0.67 0.475686
Target:  5'- uGaCGGGuCGggGGuGCUGGUacaGGCCg- -3'
miRNA:   3'- gC-GCCC-GCuuCCuCGACCGc--CCGGac -5'
29430 3' -64.1 NC_006151.1 + 17279 0.67 0.475686
Target:  5'- gGCGGGCugauacGGAGGGGCUcccCGGGCUUc -3'
miRNA:   3'- gCGCCCG------CUUCCUCGAcc-GCCCGGAc -5'
29430 3' -64.1 NC_006151.1 + 18417 0.67 0.475686
Target:  5'- cCGcCGGGgGAGGaGGGCcgccGGCGGGCg-- -3'
miRNA:   3'- -GC-GCCCgCUUC-CUCGa---CCGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 54918 0.67 0.475686
Target:  5'- gCGCGugcacGGCG-AGGuGCUGGCGuGCCa- -3'
miRNA:   3'- -GCGC-----CCGCuUCCuCGACCGCcCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.